Detail information of GWHGAAZE027082


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN73058.10hypothetical protein VITISV_007599 [Vitis vinifera]
COGYP_002773918.13E-54ribokinase
Swissprottr|P37829|SCRK_SOLTU2E-18Fructokinase
trEMBLtr|A5C4V0|A5C4V0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN73058.1}
TAIR10AT1G17160.12E-127pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1448121514483310+
GWHAAZE00000008mRNA1448121514483310+
GWHAAZE00000008exon1448121514481805+
GWHAAZE00000008exon1448258914482774+
GWHAAZE00000008exon1448293014483125+
GWHAAZE00000008exon1448321914483310+
GWHAAZE00000008CDS1448121514481805+
GWHAAZE00000008CDS1448258914482774+
GWHAAZE00000008CDS1448293014483125+
GWHAAZE00000008CDS1448321914483310+
Transcript Sequence

Network for GWHGAAZE027082

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0086map00630 Glyoxylate and dicarboxylate metabolism
map00020 Citrate cycle
GO:0006014 D-ribose metabolic process GOslim:biological_process
GO:0004747 ribokinase activity GOslim:molecular_function
map01200 Carbon metabolism
map01120 Microbial metabolism in diverse environments
GO:0016615 malate dehydrogenase activity GOslim:molecular_function
GO:0030060 L-malate dehydrogenase activity GOslim:molecular_function
GO:0006108 malate metabolic process GOslim:biological_process
map01100 Metabolic pathways
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0019752 carboxylic acid metabolic process GOslim:biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor GOslim:molecular_function
GO:0016301 kinase activity GOslim:molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GOslim:molecular_function
map00720 Carbon fixation pathways in prokaryotes
map00030 Pentose phosphate pathway
map00710 Carbon fixation in photosynthetic organisms
map01110 Biosynthesis of secondary metabolites
map00270 Cysteine and methionine metabolism
map00620 Pyruvate metabolism
map01210 2-Oxocarboxylic acid metabolism


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00294.25PfkB513433.90E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00852rbsK, RBKS Metabolic pathways map01100
Pentose phosphate pathwaymap00030

Gene Ontology

GO term OntologyName
GO:0006014biological_processD-ribose metabolic process
GO:0004747molecular_functionribokinase activity
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
GO:0016301molecular_functionkinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.122
SRR3591706second leaf18.829
SRR3591707mature leaf14.559
SRR3591708Shoot apex25.439
SRR3591709Stem25.540
SRR3591710White floral bud36.714
SRR3591711White flower49.424
SRR3591712Green floral bud36.581
SRR3591713Yellow flower47.595
SRP173429 SRR8316895Juvenile bud stage 17.557
SRR8316896Juvenile bud stage 32.061
SRR8316897Juvenile bud stage 14.874
SRR8316894Third green stage 14.927
SRR8316900Third green stage 39.971
SRR8316901Third green stage 35.727
SRR8316898Complete white stage 14.583
SRR8316899Complete white stage 35.266
SRR8316903Complete white stage 18.147
SRR8316902Silver flowering stage15.342
SRR8316904Silver flowering stage21.230
SRR8316905Silver flowering stage10.663
SRR8316906Gold flowering stage 35.458
SRR8316907Gold flowering stage 33.596
SRR8316908Gold flowering stage 33.003
SRP132670SRR6706286Control53.421
SRR6706287Light intensity 50%51.685
SRR6706288Light intensity 20%52.780
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.752
CNS0095593Slightly white alabastrum(diploid) 220.982
CNS0095594Slightly white alabastrum(diploid) 327.243
CNS0095595Whole white alabastrum(diploid) 220.463
CNS0095596Whole white alabastrum(diploid) 325.274
CNS0095597Whole white alabastrum(diploid) 423.154
CNS0095598Silvery flower (diploied) 116.812
CNS0095599Silvery flower (diploied) 215.870
CNS0095600Silvery flower (diploied) 338.893
CNS0095601Golden flower (diploid) 119.053
CNS0095602Golden flower (diploid) 232.857
CNS0095603Golden flower (diploid) 332.400
CNS0095604Slightly white alabastrum(tetraploid) 128.821
CNS0095605Slightly white alabastrum(tetraploid) 223.446
CNS0095606Slightly white alabastrum(tetraploid) 334.531
CNS0095607Whole white alabastrum(tetraploid) 123.725
CNS0095608Whole white alabastrum(tetraploid) 221.138
CNS0095609Whole white alabastrum(tetraploid) 334.871
CNS0095610Silvery flower (tetraploid) 143.594
CNS0095611Silvery flower (tetraploid) 247.896
CNS0095612Silvery flower (tetraploid) 327.425
CNS0095613Golden flower (tetraploid) 126.576
CNS0095614Golden flower (tetraploid) 241.717
CNS0095615Golden flower (tetraploid) 328.646
CRA001975CRR073297Stem 131.891
CRR073298Stem 229.024
CRR073299Stem 328.910
CRR073300Leaf 137.797
CRR073301Leaf 234.555
CRR073302Leaf 332.045
CRR073303Juvenile bud 141.202
CRR073304Juvenile bud 233.825
CRR073305Juvenile bud 338.547
CRR073306Third green 114.224
CRR073307Third green 214.599
CRR073308Third green 316.662
CRR073309Second white 112.769
CRR073310Second white 219.844
CRR073311Second white 315.283
CRR073312Silver flowering 111.643
CRR073313Silver flowering 210.031
CRR073314Silver flowering 311.087
CRR073315Gold flowering 114.763
CRR073316Gold flowering 214.166
CRR073317Gold flowering 39.769
CRR073318Tawny withering 118.213
CRR073319Tawny withering 212.655
CRR073320Tawny withering 313.294