Gene detail

Detail information of GWHGAAZE027048

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN70971.1	0	hypothetical protein VITISV_009202 [Vitis vinifera]
COG	YP_004775215.1	3E-65	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SHI2\|Y1723_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (Precursor)
trEMBL	tr\|A5C7Y8\|A5C7Y8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN70971.1}
TAIR10	AT1G17230.1	0	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	14050108	14053795	-
GWHAAZE00000008	mRNA	14050108	14053795	-
GWHAAZE00000008	exon	14050108	14050493	-
GWHAAZE00000008	exon	14050894	14053795	-
GWHAAZE00000008	CDS	14050894	14053795	-
GWHAAZE00000008	CDS	14050108	14050493	-

Transcript Sequence
>GWHTAAZE027082 ATGAATTTGCACCTTCTGCTATTGATTTCATATGCCATTGTCTTTGTTGAACCGTTAAACGAAGAGGGTGCTACCCTTTTGGAGTTTAGGAGTTCCCTTGTCGACCCCAATAGCATTCTCAATAGCTGGAACTCGACAGATATCGTTCCTTGCAATTGGACTGGTGTAGGGTGCTCCAACGATTATAAGGTAACCTCTATAAATCTCAGTGGCCTCCATTTGTCTGGTAATTTAACTTCAAGCATTTGTAAACTCCCTTACTTAATGGAGTTGAATGTATCGACAAACTTCATTTCTGGTCCAATTCCTAATGATTTCTCTAATTGTCATAAGTTAGAGGTTTTAGACCTTTGTACGAATAGGTTCCACAGTAAATTTCCAACCCAACTTCTCAAAATTACATCCCTCAGAGAGATTTATATTTGTGAGAATTATATTTATGGTGAAATCCCTGAGGAGATTGGAGATTTAACTTCACTTGAAGAGCTTGTTATTCACAGTAACAATCTCACCGGAACGATTCCCTTGTCCATTAGTAAACTGCATATGCTTAGGATTATCAGGGCAGGTCGAAATTTTTTATCGGGTCCAATACCTTCTGAAATAAGTGAATGTGAGAACTTAGAGGTTCTTGGGTTGGCACAGAATAGGCTTGAGGGTTCTTTTCCTACAGAGCTTCAAAAGCTTAAGAATCTGACCAACTTGGTCCTTTGGCAAAATCTTTTATCCGGTACAATTCCTCCCGAGATTGGGAATTTTAGTAGCCTCCAATTACTCGCTTTGCATGAAAATTCCTTCATTGGAGGAATTCCCAAAGAGCTTGGAATGTTGACTCAGCTGAACAGGTTGTACATTTATACAAACCAGTTGAATGGAACGATTCCACGAGAACTGGGTAATTGTACAAGTGCAGTTGAGATTGATCTTTCCGAAAATCGTTTAAGCGGGTTCATCCCAGAAGAGTTAGGTAGGATTCCAAATCTCCGTTTGCTTCATCTTTTCGAAAACCTCCTTCAGGGAGGTATACCTAAGGAGCTTGGAAATTTGAATCAGCTCAAGAAAATAGATTTGTCCATAAATAATTTGACAGGTACAATTCCCCCAGAGTTTCAAAATCTCACATTCTTGGAGAATTTCCAACTTTTTGATAATCATCTTGAAGGCAGTATTCCTCCACTGATCGGGGTCAACAGCAACCTTTCTGTTCTTGACATGTCCATGAATAATCTATCGGGCAGCATACCTGCACAACTTTGCAAGTTCCAAAAATTGATTTTTCTAAGCCTCGGATCGAATAAATTAGCGGGAAATATTCCCCATGGTTTAAAGACATGCAAGCCCCTTATACAGCTAATGTTAGGAGATAATCGGCTTACAGGTACCCTTCCCGTCGAATTATCCAACCTTCACAATCTTTCTGCTCTTGAACTCTATCAAAATCGATTCTCGGGACTTATACCCCCACAAGTAGGGCAACTTAAGAGCGTAAAGAGGCTTCATTTATCAGATAACTACTTTTTTGGCCACATTCCTCCTCAGATTGGCGAGCTAATGCAGCTCGTTACATTCAATATCTCTTCTAACCGGCTTTCTGGGACTATCCCTCATGAGTTGGGGAATTGTAAAATGCTCCAAAGGCTCGATCTTAGTAGGAATTGGTTCATGGGTTATCTGCCGTTTACACTGGGGAAGTTAGTGAATCTTGAATTGCTTAAGCTATCTGATAACAAATTGACTGGGCCGATACCAAGTAGTTTAGGGAGTCTAGTCCGATTGACCGAATTGCAAATGGGCGGTAATCTTTTTTCGGGTACTATTCCTGTCGAGTTGGGTCAACTTTCTGCTCTACAAATTGCACTCAATCTCAGTCATAATGCTCTGTCTGGCACAATTCCTGATAAGCTGGGCAATTTGCAGATGCTTGAATCACTTTACTTGAATGACAATCAATTTGTTGGTGAAATACCTGTTTCTATCGGCGAGTTAATAAGCCTTTTGGTCTGCAATTTGTCTAATAATAACCTAGTCGGAATAGTACCGGATACCGCTTTGTTTCGGAAAATGGACTCCAGTAACTTTGCTGGAAATAATGGGTTATGCAGATTGAGTTCATATAATTGTCATCAACCTTCGGTTCCATCATTGGCTCCAAATTCTAGCTGGTTGAAGGAGGGCTCAAATAAGGATAAAATAGTGAGCATTGTCTCTTTGAGTATCGGATTGATCTCATTAACTTTCATTGTGGGTGTTTGTTGGGTAATGAAGCGCCGTAGACCTCATTTTGCTTCACTTCAAGATCAAGTAAAAGCTGGTGTTTTAGATAATTACTTCTTTCCAAAAGAAGGGTTCACTTATCAAGATCTTGTCGAAGCGACTGGGAATTTTTCAGAGGGTGTAGTGATAGGAAGTGGAGCCTGTGGGACCGTTTACAAGGCTGTAATGGCCAATGGTGAGTTGATTGCCGTTAAAAAATTGAAGTCCCGTGGAGAAGGAGCTAGTGTTGACCAAAGTTTTCTCGCTGAAATTTCTACTCTTGGAAAGATTAGGCACAGGAATATTGTGAAGCTTTACGGGTTTTGCTATCACCAGGACTCGAATCTTTTGTTGTATGAGTACATGTTAAATGGGAGTCTAGGTGAAGTACTTCACGGTGACGAGAATACATGTATACTAGACTGGAATGATCGTTACAAGATCGCCCTTGGAGCTGCTGAGGGTTTATGCTATCTCCACTACGATTGTAAGCCCCAAATCATTCATCGTGATATAAAATCGAACAATATCTTACTCGATGAAATGCTTCAAGCCCATGTGGGAGATTTTGGCTTGGCAAAGTTGATCGACTTTCCCTACTCGAAGTCCATGTCTGCTGTTGCTGGCTCATATGGCTACATCGCCCCAGAATATGCCTACACAATGAAAGTATCAGAGAAATGTGACATCTATAGTTTTGGGGTAGTTCTACTGGAACTGGTGACAGGGAGGTCACCAGTTCAGCCACTTGATAATGGAGGGGACCTTGTAACTTGGGTGAGAAGATCGATACATGGGGTGGTGCCTTCTGAGATATATGACAAGCGGCTAGATTTGAGTACTAAAAGGACAGCGGAAGAAATGTCGCTAGTTCTCAAGATTGGATTGTTCTGCACCAGTACATCCCCAGTTAATAGGCCTACAATGAGAGAAGTCATTTCCATGTTGATCGAAGCAAGGGAGACCGTGAGTAATTCACCATCGTCTCCCACATCAGAAACTCCTTTGCATGAGGATGATTCTTCCAAAGGTTAA

Network for GWHGAAZE027048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	20	59	8.70E-13
PF00069.26	Pkinase	797	1063	2.70E-47

Protein Sequence

>GWHPAAZE027066
MNLHLLLLISYAIVFVEPLNEEGATLLEFRSSLVDPNSILNSWNSTDIVPCNWTGVGCSNDYKVTSINLSGLHLSGNLTSSICKLPYLMELNVSTNFISGPIPNDFSNCHKLEVLDLCTNRFHSKFPTQLLKITSLREIYICENYIYGEIPEEIGDLTSLEELVIHSNNLTGTIPLSISKLHMLRIIRAGRNFLSGPIPSEISECENLEVLGLAQNRLEGSFPTELQKLKNLTNLVLWQNLLSGTIPPEIGNFSSLQLLALHENSFIGGIPKELGMLTQLNRLYIYTNQLNGTIPRELGNCTSAVEIDLSENRLSGFIPEELGRIPNLRLLHLFENLLQGGIPKELGNLNQLKKIDLSINNLTGTIPPEFQNLTFLENFQLFDNHLEGSIPPLIGVNSNLSVLDMSMNNLSGSIPAQLCKFQKLIFLSLGSNKLAGNIPHGLKTCKPLIQLMLGDNRLTGTLPVELSNLHNLSALELYQNRFSGLIPPQVGQLKSVKRLHLSDNYFFGHIPPQIGELMQLVTFNISSNRLSGTIPHELGNCKMLQRLDLSRNWFMGYLPFTLGKLVNLELLKLSDNKLTGPIPSSLGSLVRLTELQMGGNLFSGTIPVELGQLSALQIALNLSHNALSGTIPDKLGNLQMLESLYLNDNQFVGEIPVSIGELISLLVCNLSNNNLVGIVPDTALFRKMDSSNFAGNNGLCRLSSYNCHQPSVPSLAPNSSWLKEGSNKDKIVSIVSLSIGLISLTFIVGVCWVMKRRRPHFASLQDQVKAGVLDNYFFPKEGFTYQDLVEATGNFSEGVVIGSGACGTVYKAVMANGELIAVKKLKSRGEGASVDQSFLAEISTLGKIRHRNIVKLYGFCYHQDSNLLLYEYMLNGSLGEVLHGDENTCILDWNDRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEMLQAHVGDFGLAKLIDFPYSKSMSAVAGSYGYIAPEYAYTMKVSEKCDIYSFGVVLLELVTGRSPVQPLDNGGDLVTWVRRSIHGVVPSEIYDKRLDLSTKRTAEEMSLVLKIGLFCTSTSPVNRPTMREVISMLIEARETVSNSPSSPTSETPLHEDDSSKG

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.871
	SRR3591706	second leaf	15.148
	SRR3591707	mature leaf	6.352
	SRR3591708	Shoot apex	20.163
	SRR3591709	Stem	17.365
	SRR3591710	White floral bud	23.646
	SRR3591711	White flower	32.209
	SRR3591712	Green floral bud	9.557
	SRR3591713	Yellow flower	16.771
SRP173429	SRR8316895	Juvenile bud stage	6.964
	SRR8316896	Juvenile bud stage	5.643
	SRR8316897	Juvenile bud stage	4.104
	SRR8316894	Third green stage	3.953
	SRR8316900	Third green stage	6.513
	SRR8316901	Third green stage	6.189
	SRR8316898	Complete white stage	6.988
	SRR8316899	Complete white stage	10.377
	SRR8316903	Complete white stage	20.760
	SRR8316902	Silver flowering stage	7.182
	SRR8316904	Silver flowering stage	15.990
	SRR8316905	Silver flowering stage	6.106
	SRR8316906	Gold flowering stage	15.348
	SRR8316907	Gold flowering stage	11.923
	SRR8316908	Gold flowering stage	13.501
SRP132670	SRR6706286	Control	3.589
	SRR6706287	Light intensity 50%	3.492
	SRR6706288	Light intensity 20%	3.196
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.258
	CNS0095593	Slightly white alabastrum(diploid) 2	3.544
	CNS0095594	Slightly white alabastrum(diploid) 3	2.822
	CNS0095595	Whole white alabastrum(diploid) 2	3.547
	CNS0095596	Whole white alabastrum(diploid) 3	1.163
	CNS0095597	Whole white alabastrum(diploid) 4	3.166
	CNS0095598	Silvery flower (diploied) 1	20.402
	CNS0095599	Silvery flower (diploied) 2	10.962
	CNS0095600	Silvery flower (diploied) 3	25.035
	CNS0095601	Golden flower (diploid) 1	11.673
	CNS0095602	Golden flower (diploid) 2	27.735
	CNS0095603	Golden flower (diploid) 3	23.417
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.859
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.639
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.341
	CNS0095610	Silvery flower (tetraploid) 1	20.970
	CNS0095611	Silvery flower (tetraploid) 2	24.373
	CNS0095612	Silvery flower (tetraploid) 3	15.587
	CNS0095613	Golden flower (tetraploid) 1	11.925
	CNS0095614	Golden flower (tetraploid) 2	25.774
	CNS0095615	Golden flower (tetraploid) 3	19.658
CRA001975	CRR073297	Stem 1	8.617
	CRR073298	Stem 2	7.511
	CRR073299	Stem 3	5.729
	CRR073300	Leaf 1	6.288
	CRR073301	Leaf 2	5.342
	CRR073302	Leaf 3	3.441
	CRR073303	Juvenile bud 1	3.242
	CRR073304	Juvenile bud 2	4.917
	CRR073305	Juvenile bud 3	7.593
	CRR073306	Third green 1	1.662
	CRR073307	Third green 2	2.804
	CRR073308	Third green 3	3.929
	CRR073309	Second white 1	1.385
	CRR073310	Second white 2	0.542
	CRR073311	Second white 3	1.283
	CRR073312	Silver flowering 1	0.828
	CRR073313	Silver flowering 2	0.490
	CRR073314	Silver flowering 3	1.125
	CRR073315	Gold flowering 1	2.793
	CRR073316	Gold flowering 2	5.229
	CRR073317	Gold flowering 3	2.376
	CRR073318	Tawny withering 1	5.920
	CRR073319	Tawny withering 2	7.123
	CRR073320	Tawny withering 3	3.811