Detail information of GWHGAAZE027040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG28028.18.9977E-123Ras-related RABB1c -like protein [Gossypium arboreum]
COGYP_008431664.11E-22hypothetical protein N186_01315
Swissprottr|P92963|RAB1C_ARATH2E-121Ras-related protein RABB1c
trEMBLtr|U5D0I8|U5D0I8_AMBTC1E-120Uncharacterized protein {ECO:0000313|EMBL:ERN19106.1}
TAIR10AT4G17170.13E-85RAB GTPase homolog B1C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1391157813916237+
GWHAAZE00000008mRNA1391157813916237+
GWHAAZE00000008exon1391157813911599+
GWHAAZE00000008exon1391205113912190+
GWHAAZE00000008exon1391243513912517+
GWHAAZE00000008exon1391538013915584+
GWHAAZE00000008exon1391614513916237+
GWHAAZE00000008CDS1391157813911599+
GWHAAZE00000008CDS1391205113912190+
GWHAAZE00000008CDS1391243513912517+
GWHAAZE00000008CDS1391538013915584+
GWHAAZE00000008CDS1391614513916237+
Transcript Sequence

Network for GWHGAAZE027040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras81521.60E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07877RAB2A AMPK signaling pathway map04152

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf210.727
SRR3591706second leaf38.064
SRR3591707mature leaf35.259
SRR3591708Shoot apex66.208
SRR3591709Stem188.286
SRR3591710White floral bud87.590
SRR3591711White flower93.054
SRR3591712Green floral bud90.054
SRR3591713Yellow flower105.296
SRP173429 SRR8316895Juvenile bud stage 46.491
SRR8316896Juvenile bud stage 63.651
SRR8316897Juvenile bud stage 29.154
SRR8316894Third green stage 33.951
SRR8316900Third green stage 84.600
SRR8316901Third green stage 90.995
SRR8316898Complete white stage 52.642
SRR8316899Complete white stage 138.784
SRR8316903Complete white stage 61.557
SRR8316902Silver flowering stage42.102
SRR8316904Silver flowering stage58.314
SRR8316905Silver flowering stage31.709
SRR8316906Gold flowering stage 80.111
SRR8316907Gold flowering stage 75.023
SRR8316908Gold flowering stage 88.333
SRP132670SRR6706286Control119.354
SRR6706287Light intensity 50%134.216
SRR6706288Light intensity 20%150.623
CNP0000432CNS0095592Slightly white alabastrum(diploid) 174.233
CNS0095593Slightly white alabastrum(diploid) 291.952
CNS0095594Slightly white alabastrum(diploid) 372.463
CNS0095595Whole white alabastrum(diploid) 271.501
CNS0095596Whole white alabastrum(diploid) 376.835
CNS0095597Whole white alabastrum(diploid) 472.924
CNS0095598Silvery flower (diploied) 165.562
CNS0095599Silvery flower (diploied) 268.861
CNS0095600Silvery flower (diploied) 387.061
CNS0095601Golden flower (diploid) 158.052
CNS0095602Golden flower (diploid) 276.219
CNS0095603Golden flower (diploid) 380.867
CNS0095604Slightly white alabastrum(tetraploid) 181.359
CNS0095605Slightly white alabastrum(tetraploid) 266.654
CNS0095606Slightly white alabastrum(tetraploid) 397.884
CNS0095607Whole white alabastrum(tetraploid) 151.602
CNS0095608Whole white alabastrum(tetraploid) 258.516
CNS0095609Whole white alabastrum(tetraploid) 367.204
CNS0095610Silvery flower (tetraploid) 174.692
CNS0095611Silvery flower (tetraploid) 267.032
CNS0095612Silvery flower (tetraploid) 360.793
CNS0095613Golden flower (tetraploid) 161.078
CNS0095614Golden flower (tetraploid) 267.591
CNS0095615Golden flower (tetraploid) 385.226
CRA001975CRR073297Stem 156.786
CRR073298Stem 250.289
CRR073299Stem 353.498
CRR073300Leaf 171.704
CRR073301Leaf 275.833
CRR073302Leaf 382.278
CRR073303Juvenile bud 171.060
CRR073304Juvenile bud 265.133
CRR073305Juvenile bud 366.908
CRR073306Third green 142.966
CRR073307Third green 268.958
CRR073308Third green 356.830
CRR073309Second white 129.619
CRR073310Second white 228.005
CRR073311Second white 319.930
CRR073312Silver flowering 123.964
CRR073313Silver flowering 218.928
CRR073314Silver flowering 321.638
CRR073315Gold flowering 123.209
CRR073316Gold flowering 235.578
CRR073317Gold flowering 321.211
CRR073318Tawny withering 179.648
CRR073319Tawny withering 277.088
CRR073320Tawny withering 395.732