Gene detail

Detail information of GWHGAAZE027028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG30086.1	0	hypothetical protein F383_12932 [Gossypium arboreum]
COG	YP_007157886.1	5E-113	indole-3-glycerol phosphate synthase
Swissprot	tr\|P49572\|TRPC_ARATH	0	Indole-3-glycerol phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|D7TD92\|D7TD92_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28465.3}
TAIR10	AT2G04400.1	5E-139	Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	13676595	13680300	-
GWHAAZE00000008	mRNA	13676595	13680300	-
GWHAAZE00000008	exon	13676595	13676684	-
GWHAAZE00000008	exon	13676966	13677034	-
GWHAAZE00000008	exon	13677173	13677255	-
GWHAAZE00000008	exon	13677619	13677697	-
GWHAAZE00000008	exon	13678062	13678226	-
GWHAAZE00000008	exon	13678329	13678373	-
GWHAAZE00000008	exon	13678497	13678571	-
GWHAAZE00000008	exon	13679015	13679191	-
GWHAAZE00000008	exon	13679320	13679565	-
GWHAAZE00000008	exon	13680136	13680300	-
GWHAAZE00000008	CDS	13680136	13680300	-
GWHAAZE00000008	CDS	13679320	13679565	-
GWHAAZE00000008	CDS	13679015	13679191	-
GWHAAZE00000008	CDS	13678497	13678571	-
GWHAAZE00000008	CDS	13678329	13678373	-
GWHAAZE00000008	CDS	13678062	13678226	-
GWHAAZE00000008	CDS	13677619	13677697	-
GWHAAZE00000008	CDS	13677173	13677255	-
GWHAAZE00000008	CDS	13676966	13677034	-
GWHAAZE00000008	CDS	13676595	13676684	-

Transcript Sequence
>GWHTAAZE027062 ATGGAGGGTTTGTTGTTGAGAGCATCGCCTAGGGTTTCACTACACTCCATTCCATCTTCAATCGACCAATTCACATCATTCCCAAAGCAAGTTCCGATCCCCGGGACTCTAATCGGCGAGCAAGGTGGCCGTAAATCCTCTTTTCCCTGTATTCGAGCTCAACAGTCACCAGTTATGCTTTCCCCAGCTAGTGACTGTAAAATAGACGCACTCAAAATCAAGGAATGGGAAGTTGGAATGTTGCAAGAGGAAATAGCTGCTAGCCAAGGTATAACAATTAGACGACGGCCACCAACTGGACCTCCTTTGCATTATGTTGGTCCTTTCGAGTTTTGTTTACCTAATGAAGACAACTCCCCTCGTAACATCCTAGAAGAAATTATATGGACCAAAGACCAAGAAGTTTCACATATGAAAGAAGGAAGACCCCTTTCTATGCTGAAGAGAGCTCTTGATACTGCTCCTCCTGCTAGAGATTTTGTTGGGTCTCTTAAGGCATCAAGCTTACGAACGGGATTGCCTGGTTTAATTGCTGAAGTCAAAAAGGCTTCTCCTAGTAGAGGAGTTTTAAGAGCAGATTTTGATCCAGTTGAAATTGCCAAAGCTTATGAGAAAGGTGGAGCTGCGTGCCTCAGTGTTTTAACCGATGAGAAGTTTTTTCAGGGAAGCTTCGAAAATTTGGAGATTATACGGAGTGCTGGAGTAAAGTGTCCTCTATTATGCAAAGAGTTTATTATAGATCCGTGGCAAATCTATTATGCTCGAATTAAAGGAGCCGATGCTGTTCTGTTAATTGCTGGTGTTTTAGCCAATCATGAAATCAGATATATGACTAGCATTTGCAAGTTGCTTGGGTTGGCAGCCCTTGTTGAGGTGCATGATGAAAGGGAAATGGATCGTGTCCTTGGAATAGATGGAATTGAACTTATTGGCATCAACAACCGTGACCTTGAAACATTCAAGGTTGATATTAGTAACACAAAGAAGCTTCTTGAGGGAGAACGTGGGCAAAGGATCCGTCAAAAAGACATAATTGTGGTTGGCGAGTCCGGACTCTTCACTCCTGATGATGTTGCATATGTACAAGAAGCTGGTGTTAAAGCGGTATTGGTTGGGGAATCAATTGTGAAACAAAGGGATCCTACAAAGGGGATAACCGGACTCTTTGGTAAAGATGTATCTTCTTCAGCTTAA

Network for GWHGAAZE027028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00218.22	IGPS	124	386	1.20E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01609	trpC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0006568	biological_process	tryptophan metabolic process
GO:0004425	molecular_function	indole-3-glycerol-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.387
	SRR3591706	second leaf	26.841
	SRR3591707	mature leaf	53.684
	SRR3591708	Shoot apex	48.792
	SRR3591709	Stem	63.415
	SRR3591710	White floral bud	91.406
	SRR3591711	White flower	80.597
	SRR3591712	Green floral bud	90.144
	SRR3591713	Yellow flower	90.249
SRP173429	SRR8316895	Juvenile bud stage	42.267
	SRR8316896	Juvenile bud stage	59.317
	SRR8316897	Juvenile bud stage	31.813
	SRR8316894	Third green stage	25.779
	SRR8316900	Third green stage	90.228
	SRR8316901	Third green stage	77.918
	SRR8316898	Complete white stage	33.284
	SRR8316899	Complete white stage	104.440
	SRR8316903	Complete white stage	49.630
	SRR8316902	Silver flowering stage	29.680
	SRR8316904	Silver flowering stage	36.985
	SRR8316905	Silver flowering stage	21.050
	SRR8316906	Gold flowering stage	69.991
	SRR8316907	Gold flowering stage	66.854
	SRR8316908	Gold flowering stage	75.036
SRP132670	SRR6706286	Control	65.516
	SRR6706287	Light intensity 50%	66.526
	SRR6706288	Light intensity 20%	71.513
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.124
	CNS0095593	Slightly white alabastrum(diploid) 2	59.075
	CNS0095594	Slightly white alabastrum(diploid) 3	65.297
	CNS0095595	Whole white alabastrum(diploid) 2	70.291
	CNS0095596	Whole white alabastrum(diploid) 3	72.673
	CNS0095597	Whole white alabastrum(diploid) 4	72.175
	CNS0095598	Silvery flower (diploied) 1	91.753
	CNS0095599	Silvery flower (diploied) 2	83.997
	CNS0095600	Silvery flower (diploied) 3	90.317
	CNS0095601	Golden flower (diploid) 1	97.495
	CNS0095602	Golden flower (diploid) 2	109.016
	CNS0095603	Golden flower (diploid) 3	101.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	90.861
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	90.562
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	84.197
	CNS0095609	Whole white alabastrum(tetraploid) 3	104.044
	CNS0095610	Silvery flower (tetraploid) 1	86.173
	CNS0095611	Silvery flower (tetraploid) 2	125.136
	CNS0095612	Silvery flower (tetraploid) 3	87.175
	CNS0095613	Golden flower (tetraploid) 1	61.795
	CNS0095614	Golden flower (tetraploid) 2	78.519
	CNS0095615	Golden flower (tetraploid) 3	69.989
CRA001975	CRR073297	Stem 1	48.043
	CRR073298	Stem 2	44.983
	CRR073299	Stem 3	43.327
	CRR073300	Leaf 1	53.640
	CRR073301	Leaf 2	42.862
	CRR073302	Leaf 3	54.089
	CRR073303	Juvenile bud 1	67.683
	CRR073304	Juvenile bud 2	58.493
	CRR073305	Juvenile bud 3	76.613
	CRR073306	Third green 1	23.488
	CRR073307	Third green 2	18.752
	CRR073308	Third green 3	19.213
	CRR073309	Second white 1	45.366
	CRR073310	Second white 2	35.577
	CRR073311	Second white 3	34.659
	CRR073312	Silver flowering 1	25.136
	CRR073313	Silver flowering 2	33.015
	CRR073314	Silver flowering 3	25.960
	CRR073315	Gold flowering 1	39.925
	CRR073316	Gold flowering 2	40.083
	CRR073317	Gold flowering 3	34.180
	CRR073318	Tawny withering 1	35.583
	CRR073319	Tawny withering 2	36.536
	CRR073320	Tawny withering 3	38.892