Gene detail

Detail information of GWHGAAZE026955

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010657218.1	PREDICTED: condensin complex subunit 2 [Vitis vinifera]
Swissprot	tr\|Q564K3\|CND2_ARATH	Condensin complex subunit 2
trEMBL	tr\|D7TEB5\|D7TEB5_VITVI	Condensin complex subunit 2 {ECO:0000256\|PIRNR:PIRNR017126}
TAIR10	AT2G32590.1	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	12764788	12771053	-
GWHAAZE00000008	mRNA	12764788	12771053	-
GWHAAZE00000008	exon	12764788	12765015	-
GWHAAZE00000008	exon	12765312	12765422	-
GWHAAZE00000008	exon	12765585	12765724	-
GWHAAZE00000008	exon	12765996	12766026	-
GWHAAZE00000008	exon	12766484	12766740	-
GWHAAZE00000008	exon	12766814	12766958	-
GWHAAZE00000008	exon	12767330	12767613	-
GWHAAZE00000008	exon	12768071	12768271	-
GWHAAZE00000008	exon	12768367	12768427	-
GWHAAZE00000008	exon	12768504	12768577	-
GWHAAZE00000008	exon	12769287	12769404	-
GWHAAZE00000008	exon	12770946	12771053	-
GWHAAZE00000008	CDS	12770946	12771053	-
GWHAAZE00000008	CDS	12769287	12769404	-
GWHAAZE00000008	CDS	12768504	12768577	-
GWHAAZE00000008	CDS	12768367	12768427	-
GWHAAZE00000008	CDS	12768071	12768271	-
GWHAAZE00000008	CDS	12767330	12767613	-
GWHAAZE00000008	CDS	12766814	12766958	-
GWHAAZE00000008	CDS	12766484	12766740	-
GWHAAZE00000008	CDS	12765996	12766026	-
GWHAAZE00000008	CDS	12765585	12765724	-
GWHAAZE00000008	CDS	12765312	12765422	-
GWHAAZE00000008	CDS	12764788	12765015	-

Transcript Sequence
>GWHTAAZE026989 ATGCAGAAAATCAATCAGAAAAATACATGGGAGCTAAGCCTGATAGATCATCTTTGCGAAATTATTAAAGTCGAAGAAGAAAATGACGTGGAGACGAATTTTCAGAAGGCAAGTTGCACTCTTGAAGCTGGAGTTAAGATTTACTCAATGAGGGTGGATTCAGTACATTCAGAGGCATATAAGGTCCTGGGAGGGATTAATCGAGTGGGACAAGAAAATGAACAAGATTGCACGTTGGAGGATGCCAACATCAGTAGCGGGCAAGAAGAAGGCAACTCTAAGAAAGAACACGATAAAAAGTTGTCACCTTTATCAACACTGGAATCATCATTTGACGCTCTTAATGTGAAGAAATTTGATGCTGCATTTGCAGTGGATCCTCTCTATCACCAGACATCTGCGCAGTTCGATGAAGGTGGGGCCAAGGGCCTCTTGTTGAACAATCTTGGATTATATGGTGGCTGCAGGGTGCTTTTCGATTCACTGGAAGTACCGGGAAAGTCGATGTCATCTGCTAGTCAACATGATAATGCGGAGGCAATTGATATTTCGTACGCCAGAGATTGCATTGAACAGATGCTGTTGAACATGCCACAAAAGGATGAAATTTCACCGAGTCTTAGGGAAATAGTCAACCGATTTGCCGAAGATAACGGGAGAGCACCAGATACTTTCTCTTCTGATCAAACATCAGCAGAACATGTTTTTGAAACTTACAATAATTATGATGCTGAGTTGGACGGTGATGCGTACGATAACTGCGGCACATGGGACTATGATAATGGTGAACAAACAAGTGTGGTTGACGAGGGAGCCTATGGCGGAGATTTACCAAGTCATCATGAGGAAACTGGAACAAATATTTTCCACGGCCCTGATGTGGATGACAGATTTGCGAAAGTTGATGGCTATTTATTTTTAAGTTTGGGATTTGCATCTAAACAAAATGCTTGGGCGGGCCCTGATCACTGGAAGTATCGGAAGGCTAAAGGTTTGGAGGAACCTACGAAGGAAAATGGATCACCATTAACGACTAAGAAACCGAGGAGTAAAAAACAAGCAGAAATTGATATTGATTTTACGAAAGCCTTGGAAAATGATGATCTGTCAGATGTATTTGCCCCTCCTAAGAACCCTAAGACACTACTACTGCCGGCAAATAGAGTACCTTGTAATACATTACTTCCAGAAGATTGTCACTATCAACCAGAGGAGCTTGTCAAGTTATTTATTCTACCTAATGTTATGTGCCTTGGGAGAAGAGGAAGAAAGCCTTCAGATGAATCAAGTCAACAAAGAGATGAGTATGGACCAATGCCAACTTGGGACGATGAAGGTGGGTTTGGTGGCGAATATGATGATGGAAATGCTTACAGTGACGTGGAGGACTCAAGCACACTTGTCTCTCAGCCTCGTCAGGTAAATAAGATTGAAGTCCAGTACGACAAAACATCTAAACAAGTTGATGTTCAGGCACTGAAAGTAACTCTTTGGGATTGTATGCAAGAATCTCAAGCAAAAACTGTTCAGTATTTACTTGGTAAAAAGGCGCAGGAGGAAACATTATCATTCAAACAAATTCTGGCCACCTTTCCAAACAAATGTAGAGCAGCGGCATCACTGGACGAGATCTCTCCCCATTTGTGTTTCATATGCCTGCTCCATCTTGCAAACGAGCACGGTTTGAGCATCCATGGCTGCTCCAACTTGGACGATCTCAGTATCCTCCTTCCAACTTCCAATGATAAGCAACAAGGT

Network for GWHGAAZE026955

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05786.15	Cnd2	3	453	9.90E-77
PF05786.15	Cnd2	458	575	1.70E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06676	BRRN1, BRN1, CAPH	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0007076	biological_process	mitotic chromosome condensation
GO:0000796	cellular_component	condensin complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.679
	SRR3591706	second leaf	2.745
	SRR3591707	mature leaf	0.413
	SRR3591708	Shoot apex	27.615
	SRR3591709	Stem	3.677
	SRR3591710	White floral bud	1.119
	SRR3591711	White flower	0.981
	SRR3591712	Green floral bud	3.639
	SRR3591713	Yellow flower	0.524
SRP173429	SRR8316895	Juvenile bud stage	4.037
	SRR8316896	Juvenile bud stage	5.845
	SRR8316897	Juvenile bud stage	2.380
	SRR8316894	Third green stage	1.765
	SRR8316900	Third green stage	2.652
	SRR8316901	Third green stage	2.047
	SRR8316898	Complete white stage	0.275
	SRR8316899	Complete white stage	1.908
	SRR8316903	Complete white stage	0.872
	SRR8316902	Silver flowering stage	0.212
	SRR8316904	Silver flowering stage	0.186
	SRR8316905	Silver flowering stage	0.083
	SRR8316906	Gold flowering stage	0.138
	SRR8316907	Gold flowering stage	0.263
	SRR8316908	Gold flowering stage	0.235
SRP132670	SRR6706286	Control	1.870
	SRR6706287	Light intensity 50%	1.539
	SRR6706288	Light intensity 20%	2.022
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.342
	CNS0095593	Slightly white alabastrum(diploid) 2	2.471
	CNS0095594	Slightly white alabastrum(diploid) 3	2.172
	CNS0095595	Whole white alabastrum(diploid) 2	2.106
	CNS0095596	Whole white alabastrum(diploid) 3	2.361
	CNS0095597	Whole white alabastrum(diploid) 4	1.939
	CNS0095598	Silvery flower (diploied) 1	1.765
	CNS0095599	Silvery flower (diploied) 2	1.466
	CNS0095600	Silvery flower (diploied) 3	1.206
	CNS0095601	Golden flower (diploid) 1	0.621
	CNS0095602	Golden flower (diploid) 2	1.023
	CNS0095603	Golden flower (diploid) 3	0.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.438
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.368
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.846
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.322
	CNS0095610	Silvery flower (tetraploid) 1	0.740
	CNS0095611	Silvery flower (tetraploid) 2	0.531
	CNS0095612	Silvery flower (tetraploid) 3	0.343
	CNS0095613	Golden flower (tetraploid) 1	0.442
	CNS0095614	Golden flower (tetraploid) 2	0.426
	CNS0095615	Golden flower (tetraploid) 3	0.214
CRA001975	CRR073297	Stem 1	4.930
	CRR073298	Stem 2	4.405
	CRR073299	Stem 3	5.401
	CRR073300	Leaf 1	1.210
	CRR073301	Leaf 2	1.341
	CRR073302	Leaf 3	1.825
	CRR073303	Juvenile bud 1	1.057
	CRR073304	Juvenile bud 2	0.459
	CRR073305	Juvenile bud 3	1.352
	CRR073306	Third green 1	0.077
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.171
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.087
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.135
	CRR073313	Silver flowering 2	0.186
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.577
	CRR073316	Gold flowering 2	0.090
	CRR073317	Gold flowering 3	0.382
	CRR073318	Tawny withering 1	5.688
	CRR073319	Tawny withering 2	6.773
	CRR073320	Tawny withering 3	7.553