Gene detail

Detail information of GWHGAAZE026897

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004488357.1	0	PREDICTED: probable galacturonosyltransferase 10-like [Cicer arietinum]
COG	YP_007080337.1	0.00000006	LPS:glycosyltransferase
Swissprot	tr\|Q9SKT6\|GAUTA_ARATH	4E-178	Probable galacturonosyltransferase 10
trEMBL	tr\|A0A068V1T1\|A0A068V1T1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_91 {ECO:0000313\|EMBL:CDP14710.1}
TAIR10	AT2G20810.1	4E-139	galacturonosyltransferase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	11653400	11654236	-
GWHAAZE00000008	mRNA	11653400	11654236	-
GWHAAZE00000008	exon	11653400	11654236	-
GWHAAZE00000008	CDS	11653400	11654236	-

Transcript Sequence
>GWHTAAZE026931 ATGTTAGTTTTCCATTTAGTAACTGACGAAGTGAACTATGCGGCAATGAAGGCCTGGTTCTCGACAAACAGTTTCCGTGGAGTAATTGTCGATGTTCAAAAGATTGAGGAATTCAGCTGGTTAAACGCTTCTTATGTCCCTGTTCTTAAACAGCTTCAAGACTCTGAAACTCAAAGCTATTACTTCTCAGGTAACAACGATAATGGTAAAACTCCGATCAAATTTCGAAACCCTAAGTATTTATCCATGTTGAACCACCTCCGGTTCTACATTCCTGAGGTTTTCCCCTCACTGAAAAAGGTAGTGTTTCTTGACGATGATGTTGTGGTTCAAAAAGATTTATCCGCTCTGTTCTCTATAGATTTGAATGGGAACGTTAATGGTGCAGTGGAGACATGTATGGAGACATTTCACAGGTACCATAAGTACTTGAATTATTCGCACCCACTTATACGCTCGCATTTTGATCCAGACGCTTGTGGGTGGGCGTTTGGGATGAATGTTTTTGACTTGGTGGAGTGGAGGAAGAGGAATGTGACCGGTATTTATCACTATTGGCAAGAAAAGAACGTGGACCGGACCTTGTGGAAGCTTGGGACGCTGCCACCTGGCCTGTTGACTTTTTACGGGTTGACTGAGCCGTTGAACTCGGCCTGGCATGTGTTGGGGCTGGGATATACTAATGTTGATCCACAGGTGATAGAGAAGGGGGCTGTTCTGCACTTCAATGGGAACTCAAAGCCATGGTTGAAGATTGGAATGGAGAAGTATAAACCCCTTTGGGACAAATATGTTGATTATACTCATTCTCTTCTACAACAGTGCAACGTCCACTGA

Network for GWHGAAZE026897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	15	252	1.50E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13648	GAUT	Metabolic pathways	map01100
K13648	GAUT	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	38.735
	SRR3591706	second leaf	26.884
	SRR3591707	mature leaf	25.439
	SRR3591708	Shoot apex	37.266
	SRR3591709	Stem	30.033
	SRR3591710	White floral bud	24.465
	SRR3591711	White flower	28.763
	SRR3591712	Green floral bud	37.460
	SRR3591713	Yellow flower	19.263
SRP173429	SRR8316895	Juvenile bud stage	27.155
	SRR8316896	Juvenile bud stage	33.964
	SRR8316897	Juvenile bud stage	16.642
	SRR8316894	Third green stage	14.023
	SRR8316900	Third green stage	39.757
	SRR8316901	Third green stage	37.346
	SRR8316898	Complete white stage	12.825
	SRR8316899	Complete white stage	48.027
	SRR8316903	Complete white stage	20.977
	SRR8316902	Silver flowering stage	13.412
	SRR8316904	Silver flowering stage	18.774
	SRR8316905	Silver flowering stage	8.784
	SRR8316906	Gold flowering stage	29.620
	SRR8316907	Gold flowering stage	24.332
	SRR8316908	Gold flowering stage	34.835
SRP132670	SRR6706286	Control	27.696
	SRR6706287	Light intensity 50%	24.207
	SRR6706288	Light intensity 20%	26.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	53.518
	CNS0095593	Slightly white alabastrum(diploid) 2	46.334
	CNS0095594	Slightly white alabastrum(diploid) 3	30.692
	CNS0095595	Whole white alabastrum(diploid) 2	37.498
	CNS0095596	Whole white alabastrum(diploid) 3	31.905
	CNS0095597	Whole white alabastrum(diploid) 4	37.019
	CNS0095598	Silvery flower (diploied) 1	33.326
	CNS0095599	Silvery flower (diploied) 2	32.925
	CNS0095600	Silvery flower (diploied) 3	36.346
	CNS0095601	Golden flower (diploid) 1	30.426
	CNS0095602	Golden flower (diploid) 2	38.290
	CNS0095603	Golden flower (diploid) 3	34.813
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.322
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.418
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.492
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.579
	CNS0095610	Silvery flower (tetraploid) 1	30.395
	CNS0095611	Silvery flower (tetraploid) 2	33.157
	CNS0095612	Silvery flower (tetraploid) 3	23.158
	CNS0095613	Golden flower (tetraploid) 1	23.101
	CNS0095614	Golden flower (tetraploid) 2	35.096
	CNS0095615	Golden flower (tetraploid) 3	20.181
CRA001975	CRR073297	Stem 1	25.857
	CRR073298	Stem 2	28.542
	CRR073299	Stem 3	29.027
	CRR073300	Leaf 1	29.515
	CRR073301	Leaf 2	32.743
	CRR073302	Leaf 3	24.452
	CRR073303	Juvenile bud 1	34.496
	CRR073304	Juvenile bud 2	22.890
	CRR073305	Juvenile bud 3	31.715
	CRR073306	Third green 1	6.439
	CRR073307	Third green 2	7.990
	CRR073308	Third green 3	6.654
	CRR073309	Second white 1	6.605
	CRR073310	Second white 2	6.628
	CRR073311	Second white 3	6.125
	CRR073312	Silver flowering 1	4.596
	CRR073313	Silver flowering 2	7.469
	CRR073314	Silver flowering 3	4.655
	CRR073315	Gold flowering 1	21.207
	CRR073316	Gold flowering 2	23.089
	CRR073317	Gold flowering 3	22.387
	CRR073318	Tawny withering 1	40.622
	CRR073319	Tawny withering 2	43.477
	CRR073320	Tawny withering 3	37.868