Detail information of GWHGAAZE026882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002306756.14.5747E-66photosystem 2 family protein [Populus trichocarpa]
Swissprottr|Q9LR64|PB27A_ARATH2E-61Photosystem II repair protein PSB27-H1, chloroplastic (Precursor)
trEMBLtr|B9H851|B9H851_POPTR2E-66Photosystem 2 family protein {ECO:0000313|EMBL:EEE93752.1}
TAIR10AT1G03600.15E-49photosystem II family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene1150775811508102-
GWHAAZE00000008mRNA1150775811508102-
GWHAAZE00000008exon1150775811508102-
GWHAAZE00000008CDS1150775811508102-
Transcript Sequence

Network for GWHGAAZE026882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13326.7PSII_Pbs27101103.70E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08902psb27 Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0010207biological_processphotosystem II assembly

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf107.353
SRR3591706second leaf221.850
SRR3591707mature leaf60.580
SRR3591708Shoot apex184.673
SRR3591709Stem67.870
SRR3591710White floral bud26.500
SRR3591711White flower15.300
SRR3591712Green floral bud10.782
SRR3591713Yellow flower2.442
SRP173429 SRR8316895Juvenile bud stage 20.195
SRR8316896Juvenile bud stage 15.137
SRR8316897Juvenile bud stage 13.486
SRR8316894Third green stage 6.601
SRR8316900Third green stage 13.870
SRR8316901Third green stage 11.588
SRR8316898Complete white stage 8.130
SRR8316899Complete white stage 8.428
SRR8316903Complete white stage 16.662
SRR8316902Silver flowering stage4.468
SRR8316904Silver flowering stage5.325
SRR8316905Silver flowering stage2.897
SRR8316906Gold flowering stage 4.826
SRR8316907Gold flowering stage 5.605
SRR8316908Gold flowering stage 3.050
SRP132670SRR6706286Control19.683
SRR6706287Light intensity 50%12.015
SRR6706288Light intensity 20%8.818
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.679
CNS0095593Slightly white alabastrum(diploid) 224.552
CNS0095594Slightly white alabastrum(diploid) 317.021
CNS0095595Whole white alabastrum(diploid) 216.357
CNS0095596Whole white alabastrum(diploid) 317.669
CNS0095597Whole white alabastrum(diploid) 414.269
CNS0095598Silvery flower (diploied) 149.824
CNS0095599Silvery flower (diploied) 243.372
CNS0095600Silvery flower (diploied) 327.234
CNS0095601Golden flower (diploid) 154.507
CNS0095602Golden flower (diploid) 230.400
CNS0095603Golden flower (diploid) 326.573
CNS0095604Slightly white alabastrum(tetraploid) 113.916
CNS0095605Slightly white alabastrum(tetraploid) 221.265
CNS0095606Slightly white alabastrum(tetraploid) 323.344
CNS0095607Whole white alabastrum(tetraploid) 119.116
CNS0095608Whole white alabastrum(tetraploid) 216.827
CNS0095609Whole white alabastrum(tetraploid) 311.974
CNS0095610Silvery flower (tetraploid) 126.879
CNS0095611Silvery flower (tetraploid) 231.768
CNS0095612Silvery flower (tetraploid) 34.881
CNS0095613Golden flower (tetraploid) 110.615
CNS0095614Golden flower (tetraploid) 214.785
CNS0095615Golden flower (tetraploid) 39.175
CRA001975CRR073297Stem 136.016
CRR073298Stem 236.849
CRR073299Stem 350.683
CRR073300Leaf 112.210
CRR073301Leaf 217.981
CRR073302Leaf 320.439
CRR073303Juvenile bud 112.166
CRR073304Juvenile bud 29.244
CRR073305Juvenile bud 321.310
CRR073306Third green 18.116
CRR073307Third green 29.526
CRR073308Third green 36.558
CRR073309Second white 10.787
CRR073310Second white 20.000
CRR073311Second white 30.683
CRR073312Silver flowering 10.115
CRR073313Silver flowering 20.687
CRR073314Silver flowering 30.439
CRR073315Gold flowering 1130.701
CRR073316Gold flowering 2124.246
CRR073317Gold flowering 3181.559
CRR073318Tawny withering 141.702
CRR073319Tawny withering 225.868
CRR073320Tawny withering 330.361