Gene detail

Detail information of GWHGAAZE026834

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006470176.1	0	PREDICTED: receptor-like protein kinase 5-like [Citrus sinensis]
COG	YP_004775215.1	8E-49	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	0	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|V4U227\|V4U227_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR59947.1}
TAIR10	AT1G28440.1	0	HAESA-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	10742012	10746402	-
GWHAAZE00000008	mRNA	10742012	10746402	-
GWHAAZE00000008	exon	10742012	10742121	-
GWHAAZE00000008	exon	10742579	10742914	-
GWHAAZE00000008	exon	10743695	10745832	-
GWHAAZE00000008	exon	10746374	10746402	-
GWHAAZE00000008	CDS	10746374	10746402	-
GWHAAZE00000008	CDS	10743695	10745832	-
GWHAAZE00000008	CDS	10742579	10742914	-
GWHAAZE00000008	CDS	10742012	10742121	-

Transcript Sequence
>GWHTAAZE026868 ATGGTAGTACTTCAGCAGCTTTGCTTAACCTTCTCCGAAGATATTCCGCCCACTTTTGGGGCTTTCCGGCAGCTCGAGAGTCTAATTCTCATCAACAATCTTCTCACTGGCTCAATCCCTCCTGCTCTAGGTAATATTTCCACCCTTAAATGGCTTCATCTCGCTTACAACCCCTTTCTACCGGGTCGGATCTCTCCGGAGCTGGGTAATTTAACTAACTTGGAGAATCTCTGGCTGAGTGGTTGTAATCTTGTGGGTCAGATTCCGGAGAGTTTTGGTTCGATGAGTCGACTCGGTAATTTCGAAGTGTCGAATAATAGACTCAGTGGGTCGATTCCGAGCTTGATTTTTGGGCTTAAGAGTATTGTGCAACTTGAGCTGTTTAACAACTCCTTCACCGGAGAAATACCGGCTGCGGGGTGGTCGAATTTGACGAAATTGAGGAACTTTGATGCGTCGATAAATAATTTGGTGGGTCAGATACCGGCCGGTTTGTGCGAATTGCCACTCGGGTCATTCGCTCTGCACGAGAATCAACTCAGTGGAGCAATACCCAAGAGTATATCTCTTTCCCCAAATTTATTTGAGCTCAAATTATTCACCAATCGACTCACAGGGTCTTTGCCAGCTCAACTGGGAAAGAATTCGGCGTTAGAAACCGTAGACGTGTCGGAAAATAAACTTTCCGGCGATATTCCGGCGAGCTTGTGCGACAAGGGGGTGTTGGTAGAGTTACTTTTGATATACAACTCATTTTCCGGCGAAATTCCGGCGAGTCTAGGCAGCTGTAGGAGCTTGAGCAGGGTCCGGCTGAGGAGCAACCGGCTTTCCGGCGAAGTTCCGGCCGGATTTTGGGGTTTGCCACATGTTTATCTGCTTGACCTTCAAGAAAATTTATTTTCTGGTAATATTTCGGGCATGATTTCTGGTGCATCTAATCTTTCGACACTCTTGTTATCGAAAAATCAGTTTGCAGGGTCCTTGCCAAATGAAGTTGGATCTTTGAGCAATTTGATTGAATTTTCGGGTAGTGATAACAAATTTAATGGGCAAATTCCAGATACAATTATCCATTTGGGTGAATTAGGGAGGCTTGATCTTAGTAACAATGAATTTTCCGGGAAAATCCCGATGGGAATTCAATCTTTGAAGCAGCTCAATGAACTTAATTTGGCAAACAATAGGCTATCCGGCCAAATCCCAGACGAAATTGGTAGTTTGCCAGTGCTGAATTACCTTGATCTATCCCGGAATTATTTTTCCGGGAAAATCCCACTTGGGTTGCAGAATCTGAAGTTGAATAAGCTCAATTTGTCAAGTAATGATCTTACAGGGGATATTCCTCCAGCTTATGCTAAAGAACTTTACAGGGATAGTTTTGTGGGCAATCCGGGCTTGTGTGGTGATATTGCTGGACTATGTCCCAAAAAACGTAGCTATAAGAATCGCAGTAATTTGTGGATACTGCGATTGATCTTTATACTTGCTGGAGCAGTTTTGTTTATTGGAATTGCTTGGTTCTTGTTTAAATACATGAAAATCAAGAAAACGAGGAAAGGACTAGCGATATCGAAGTGGAGATCATTTCACAAGTTGGGTTTCAGTGAATTTGAAATCCTCGATTGCATCAACGAAGACAATGTTATTGGAAGTGGATCTTCTGGGAAAGTTTATAAGGCCATTCTTAGTAACGGCGAAGTTGTTGCGGTGAAGAAGCTATGGGAAAGATTAAACAAAGACGAAACTTGTTCTGTTGAATCTAAGAAATGCGAGTTTGAAATGGAAGTTGAGACACTGGGAAAAATTAGGCACAAGAATATAGTGAGATTATGGTGTTGTTGCAATACTGGGACTTGTAAGCTTCTGGTGTATGAATATATGCCGAATGGGAGCTTAGGTGATTTGCTGCATGGTGGCAAAGGAGGTTCGTTGGATTGGCCGACGAGGTTTAGGATAGCTTTAGACGCGGCCGAGGGGTTGTGTTATTTGCATCACGATTGTGCTCCTCCGATTGTTCATAGGGATGTTAAATCAAACAATATATTGTTGGATGGAGAGTTTGGAGCAAGAATTGCTGATTTTGGTGTGGCTAAAATTCTTGAAGCTGTCAACAAGGGGGATGAATCTATGTCCGTAATCGCGGGTTCTTGTGGTTACATTGCACCAGAATATGCATATACTCTTCGAGTGACTGAAAAGAGCGACATTTACAGTTTCGGAGTTGTCATTCTCGAGTTAGTGACCGGCAGGCCACCAATCGACCCAAAATTTGGGGATAAAGACTTGGCTGCATGGGTTTGCACCAGCTTGGACCAGAAAGGACCTGACTGCATGCTCGACCCAAATCTTGATTCGAGTTACAAGGAGCAAATTTCTAGGGTTCTTGACATTGGTTTGCTTTGCGTCAGCTCACTTCCATTGAACCGACCTTCAATGCGAAGTGTGGTGAAAATGCTGCAAGAAGCTGGGGCAGAAAATAAGCCCAAAATTGCAAAGAACGATGGTTGTACTTTTGTTGAAAATGGTGGGGAGTTCACACTTGTTTTTTGGCATCCGGAGCTAAAAGCCGTGTTTCGTTTAGTGAAATGGGACCCCGAATTTGTTTTCTTTTGA

Network for GWHGAAZE026834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	545	768	1.50E-43

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.485
	SRR3591706	second leaf	2.768
	SRR3591707	mature leaf	1.637
	SRR3591708	Shoot apex	5.357
	SRR3591709	Stem	9.386
	SRR3591710	White floral bud	6.650
	SRR3591711	White flower	8.672
	SRR3591712	Green floral bud	4.483
	SRR3591713	Yellow flower	6.876
SRP173429	SRR8316895	Juvenile bud stage	5.289
	SRR8316896	Juvenile bud stage	4.668
	SRR8316897	Juvenile bud stage	2.895
	SRR8316894	Third green stage	1.646
	SRR8316900	Third green stage	2.692
	SRR8316901	Third green stage	2.472
	SRR8316898	Complete white stage	1.073
	SRR8316899	Complete white stage	6.066
	SRR8316903	Complete white stage	2.455
	SRR8316902	Silver flowering stage	1.488
	SRR8316904	Silver flowering stage	2.864
	SRR8316905	Silver flowering stage	0.849
	SRR8316906	Gold flowering stage	6.090
	SRR8316907	Gold flowering stage	3.563
	SRR8316908	Gold flowering stage	6.505
SRP132670	SRR6706286	Control	3.396
	SRR6706287	Light intensity 50%	3.042
	SRR6706288	Light intensity 20%	2.805
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.285
	CNS0095593	Slightly white alabastrum(diploid) 2	5.964
	CNS0095594	Slightly white alabastrum(diploid) 3	5.785
	CNS0095595	Whole white alabastrum(diploid) 2	4.951
	CNS0095596	Whole white alabastrum(diploid) 3	1.026
	CNS0095597	Whole white alabastrum(diploid) 4	3.334
	CNS0095598	Silvery flower (diploied) 1	8.033
	CNS0095599	Silvery flower (diploied) 2	6.290
	CNS0095600	Silvery flower (diploied) 3	5.656
	CNS0095601	Golden flower (diploid) 1	6.697
	CNS0095602	Golden flower (diploid) 2	8.060
	CNS0095603	Golden flower (diploid) 3	7.968
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.452
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.507
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.447
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.933
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.139
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.051
	CNS0095610	Silvery flower (tetraploid) 1	3.798
	CNS0095611	Silvery flower (tetraploid) 2	3.842
	CNS0095612	Silvery flower (tetraploid) 3	4.147
	CNS0095613	Golden flower (tetraploid) 1	1.677
	CNS0095614	Golden flower (tetraploid) 2	4.779
	CNS0095615	Golden flower (tetraploid) 3	1.062
CRA001975	CRR073297	Stem 1	6.822
	CRR073298	Stem 2	5.230
	CRR073299	Stem 3	3.834
	CRR073300	Leaf 1	4.530
	CRR073301	Leaf 2	4.041
	CRR073302	Leaf 3	2.893
	CRR073303	Juvenile bud 1	2.711
	CRR073304	Juvenile bud 2	1.236
	CRR073305	Juvenile bud 3	4.545
	CRR073306	Third green 1	1.102
	CRR073307	Third green 2	1.019
	CRR073308	Third green 3	1.759
	CRR073309	Second white 1	1.258
	CRR073310	Second white 2	0.929
	CRR073311	Second white 3	0.638
	CRR073312	Silver flowering 1	1.516
	CRR073313	Silver flowering 2	1.819
	CRR073314	Silver flowering 3	0.559
	CRR073315	Gold flowering 1	1.601
	CRR073316	Gold flowering 2	1.747
	CRR073317	Gold flowering 3	1.719
	CRR073318	Tawny withering 1	12.012
	CRR073319	Tawny withering 2	11.577
	CRR073320	Tawny withering 3	10.672