Gene detail

Detail information of GWHGAAZE026686

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260579.1	0	PREDICTED: methionine--tRNA ligase, mitochondrial [Nelumbo nucifera]
COG	YP_007170058.1	0	methionyl-tRNA synthetase
Swissprot	tr\|Q9ZTS1\|SYM_ORYSJ	1E-47	Probable methionine--tRNA ligase
trEMBL	tr\|D7TLW0\|D7TLW0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31697.3}
TAIR10	AT3G55400.1	0	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	8603105	8610277	+
GWHAAZE00000008	mRNA	8603105	8610277	+
GWHAAZE00000008	exon	8603105	8603212	+
GWHAAZE00000008	exon	8603995	8604138	+
GWHAAZE00000008	exon	8604231	8604380	+
GWHAAZE00000008	exon	8604644	8604656	+
GWHAAZE00000008	exon	8605164	8605357	+
GWHAAZE00000008	exon	8606143	8606267	+
GWHAAZE00000008	exon	8606416	8606509	+
GWHAAZE00000008	exon	8607233	8607331	+
GWHAAZE00000008	exon	8608027	8608207	+
GWHAAZE00000008	exon	8608786	8608901	+
GWHAAZE00000008	exon	8609233	8609388	+
GWHAAZE00000008	exon	8609867	8609995	+
GWHAAZE00000008	exon	8610107	8610277	+
GWHAAZE00000008	CDS	8603105	8603212	+
GWHAAZE00000008	CDS	8603995	8604138	+
GWHAAZE00000008	CDS	8604231	8604380	+
GWHAAZE00000008	CDS	8604644	8604656	+
GWHAAZE00000008	CDS	8605164	8605357	+
GWHAAZE00000008	CDS	8606143	8606267	+
GWHAAZE00000008	CDS	8606416	8606509	+
GWHAAZE00000008	CDS	8607233	8607331	+
GWHAAZE00000008	CDS	8608027	8608207	+
GWHAAZE00000008	CDS	8608786	8608901	+
GWHAAZE00000008	CDS	8609233	8609388	+
GWHAAZE00000008	CDS	8609867	8609995	+
GWHAAZE00000008	CDS	8610107	8610277	+

Transcript Sequence
>GWHTAAZE026720 TCAGAGCCTCCTTTTCTGCTAACCACTCCGCTTTATTACGTAAATGCCCCTCCTCACATGGGCAGCGCCTACACCACCATTGCCGCCGACTCCATTTCTCGTTTTCAGAGGCTTCTTGGGAAAAAGGTTATATTCATCACTGGTACAGATGAGCATGGTGAGAAGATTGCCACTGCTGCCGCTGCCCGTGGTTCCAGCCCAAGTGACCACTGTGATGAAATTTCACAAGCTTACAAGGCACTTTGGAAAGATTTACTTATAGACTATGACAAGTTCATCAGAACAACTGATCCTAGGCACGAAGCTATTGTGAAGGAATTTTACTCTAAGGTTCTTGCAAGTGGTGACATTTACCAGGCTGATTATGAAGGACTATATTGTGTCAATTGTGAGGAGTACAAGTGGCCATGCTTGGTTTGTGTATGTGTGGGCAATATGCAGGATGAGAAAGAATTGTTGGATAACAACTGTTGCCCTATGCATCTAAAGCCGTGCGTTCCAAGGAAAGAAGACAATTACTTTTTTGCCCTCTCAAAGTATCAAAAGAAATTGGAAGAGACTTTAGAGCAAAATCCGGATTTTGTGCAGCCTTCATCTCGTTTGAATGAGGTTCAAGGTTGGGTCAAAAGTGGGCTGAGAGATTTCTCTATTTCCCGAGCATCAGTGGATTGGGGCATTCCGGTTCCTAATGACACCAATCAAACTATTTATGTTTGGTTCGACGCTTTACTGGGATATATTTCTGCACTGTCAGAGGATATAGAGCAACCTAATTTGCAAACTGCAGTTTCGTCTGGTTGGCCTGCTGCACTGCACTTGATTGGCAAGGATATCTTGCGTTTTCATGCAGTTTATTGGCCTGCTATGTTAATGTCTGCTGGACTAAGCATTCCTAAGACAGTGTTTGGTCATGGATTCCTGACAAAGGATGGTATGAAGATGGGAAAGTCACTAGGGAATACGCTTGAACCAAATGATTTGGTGCATAGATTTGGAGCCGATGCAGTCAGGTACTTTTTCCTCAGGGAGGTGGAATTTGGAAACGATGGAGACTACTCAGAAGACCGTTTCATAAACATTGTCAATGCAAATCTAGCCAATACTATTGGAAATCTTCTTAACCGTACACTTGGGCTTCTGAAAAAGAATTGCAAATCTACATTGACAATGGATTCCACTGTTGCTGCCGAAGGAAATGCATTCAAGGATACTGTGGAGAAGCTAGTTGAGAAGGCCCGGGTTGAGTATGAAAACCTCTCACTATCATCAGCTTGTGAGGCTGTACTAGAAATTGGTAATGCTGGTAATTTGTACATCAATGAACGTGCACCGTGGTCTCTTTTTAAACAAGGGGGCGCTTCCTTTGAAGCTGCTGCAAAGGACCTTGTGATTGTATTGGAAGCTATGAGGATTATAGCAGTTGCTCTTTCGCCTATCACACCAAACCTATCTTTCAGAATATATTCCCAACTTGGCTACTCAGAGGACCAGTTCAATGCTGCAACCTGGAATGAGACCAAATGGGGAAGGCTAAAAGGTGGACAAGTGATGGCTCAACCAAAACCTGTTTTTGCTAGGATTGAAAGCCCAACAACAGAGGGAGGGGCTGAAGGGATGAAGACCGTCACTAAAAAGAAGGATGAGACATCTCAGAGTGAGAGCTTGGTACAAGCAGCCTAG

Network for GWHGAAZE026686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09334.12	tRNA-synt_1g	6	377	3.80E-107
PF08264.14	Anticodon_1	405	508	4.60E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01874	MARS, metG	Metabolic pathways	map01100
		Selenocompound metabolism	map00450
		Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006431	biological_process	methionyl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0004825	molecular_function	methionine-tRNA ligase activity
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0000166	molecular_function	nucleotide binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.761
	SRR3591706	second leaf	18.058
	SRR3591707	mature leaf	15.882
	SRR3591708	Shoot apex	13.119
	SRR3591709	Stem	8.725
	SRR3591710	White floral bud	7.790
	SRR3591711	White flower	17.021
	SRR3591712	Green floral bud	12.370
	SRR3591713	Yellow flower	16.743
SRP173429	SRR8316895	Juvenile bud stage	9.551
	SRR8316896	Juvenile bud stage	12.094
	SRR8316897	Juvenile bud stage	5.815
	SRR8316894	Third green stage	5.374
	SRR8316900	Third green stage	16.812
	SRR8316901	Third green stage	14.303
	SRR8316898	Complete white stage	4.394
	SRR8316899	Complete white stage	14.202
	SRR8316903	Complete white stage	9.022
	SRR8316902	Silver flowering stage	5.325
	SRR8316904	Silver flowering stage	8.418
	SRR8316905	Silver flowering stage	4.432
	SRR8316906	Gold flowering stage	18.630
	SRR8316907	Gold flowering stage	14.327
	SRR8316908	Gold flowering stage	18.947
SRP132670	SRR6706286	Control	13.228
	SRR6706287	Light intensity 50%	13.264
	SRR6706288	Light intensity 20%	14.910
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.487
	CNS0095593	Slightly white alabastrum(diploid) 2	8.400
	CNS0095594	Slightly white alabastrum(diploid) 3	9.377
	CNS0095595	Whole white alabastrum(diploid) 2	8.893
	CNS0095596	Whole white alabastrum(diploid) 3	8.875
	CNS0095597	Whole white alabastrum(diploid) 4	6.984
	CNS0095598	Silvery flower (diploied) 1	15.836
	CNS0095599	Silvery flower (diploied) 2	10.932
	CNS0095600	Silvery flower (diploied) 3	15.159
	CNS0095601	Golden flower (diploid) 1	11.596
	CNS0095602	Golden flower (diploid) 2	13.275
	CNS0095603	Golden flower (diploid) 3	16.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.493
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.909
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.424
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.779
	CNS0095610	Silvery flower (tetraploid) 1	14.817
	CNS0095611	Silvery flower (tetraploid) 2	14.803
	CNS0095612	Silvery flower (tetraploid) 3	10.316
	CNS0095613	Golden flower (tetraploid) 1	10.116
	CNS0095614	Golden flower (tetraploid) 2	12.925
	CNS0095615	Golden flower (tetraploid) 3	9.345
CRA001975	CRR073297	Stem 1	15.940
	CRR073298	Stem 2	14.540
	CRR073299	Stem 3	13.158
	CRR073300	Leaf 1	12.703
	CRR073301	Leaf 2	13.982
	CRR073302	Leaf 3	12.548
	CRR073303	Juvenile bud 1	14.358
	CRR073304	Juvenile bud 2	9.429
	CRR073305	Juvenile bud 3	14.428
	CRR073306	Third green 1	3.591
	CRR073307	Third green 2	3.028
	CRR073308	Third green 3	4.116
	CRR073309	Second white 1	12.738
	CRR073310	Second white 2	13.124
	CRR073311	Second white 3	12.567
	CRR073312	Silver flowering 1	17.277
	CRR073313	Silver flowering 2	16.569
	CRR073314	Silver flowering 3	13.709
	CRR073315	Gold flowering 1	28.430
	CRR073316	Gold flowering 2	38.354
	CRR073317	Gold flowering 3	22.321
	CRR073318	Tawny withering 1	11.442
	CRR073319	Tawny withering 2	12.626
	CRR073320	Tawny withering 3	11.766