Gene detail

Detail information of GWHGAAZE026633

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006355262.1	0	PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Solanum tuberosum]
COG	YP_005059763.1	7E-57	glutamate 5-kinase
Swissprot	tr\|O04015\|P5CS_ACTDE	0	Gamma-glutamyl phosphate reductase
trEMBL	tr\|A0A022R6D5\|A0A022R6D5_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35248.1}
TAIR10	AT2G39800.4	1E-133	delta1-pyrroline-5-carboxylate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	7841793	7848070	+
GWHAAZE00000008	mRNA	7841793	7848070	+
GWHAAZE00000008	exon	7841793	7842116	+
GWHAAZE00000008	exon	7843519	7843590	+
GWHAAZE00000008	exon	7843706	7843809	+
GWHAAZE00000008	exon	7845256	7845358	+
GWHAAZE00000008	exon	7845518	7845679	+
GWHAAZE00000008	exon	7846315	7846592	+
GWHAAZE00000008	exon	7847442	7847592	+
GWHAAZE00000008	exon	7847873	7848070	+
GWHAAZE00000008	five_prime_UTR	7841793	7842056	+
GWHAAZE00000008	CDS	7842057	7842116	+
GWHAAZE00000008	CDS	7843519	7843590	+
GWHAAZE00000008	CDS	7843706	7843809	+
GWHAAZE00000008	CDS	7845256	7845358	+
GWHAAZE00000008	CDS	7845518	7845679	+
GWHAAZE00000008	CDS	7846315	7846592	+
GWHAAZE00000008	CDS	7847442	7847592	+
GWHAAZE00000008	CDS	7847873	7848070	+

Transcript Sequence
>GWHTAAZE026667 TATGAGGAAAAACAATCCCCTACGCTGACCCTCACCGAAACTATTCTGCTCCCCCAGTCACGGGGCGCCGCGTTTTTTTATATTACCACGTGGCAATCTGAAACCTCTGATATAAACCACGACGATGACAGTTTTGAGTCTTCACAACACTCCTCCATATCTCTCTATCCTTCCCGTCTCCGTTGAATGAATTAAGTTCTCTCAAAAATCTTAGAAAACCCTAGAACAGTAGTTGTAATTTTCACCCTCTTTTTTTAGAGCAACATGGAGAATGTGGATTCAACTCGACATTTCGTCAAGGAAGTTAAACGGATTGTTATTAAGGTTGGGACAGCTGTTGTTACTCGAGCTGATGGAAGGCTAGCGCTTGGAAGATTAGGAGCTCTTTGTGAGCAGATTCAAGAACTAAATGCTCGAGGATATGAGGTTATTTTGGTGTCATCAGGTGCTGTTGGTGTTGGTCGCCAGCGGCTTAGATATAGGAAATTAATCAACAGCAGCTTTGCTGATCTTCAGAAACCACAAGTTGAGCTTGATGGAAAGGCTTGTGCAGCTGTTGGTCAAAACGGTCTTATGGCTCTCTACGACACATTGTTCAGTCAGCTGGATGTAACATCAGCCCAGCTTCTTGTGACGGACAATGATTTTAGGGATTCAGATTTTAGAAAGCAACTAACTGAAACAGTAAAATCGTTATTGGCTCTGAAGGTAGTTCCTATATTCAATGAAAACGATGCAGTCAGCACCAGAAAAGCTCCTTATGAGGATTCTTCTGGTATATTCTGGGACAATGACAGTTTAGCGGCTTTGCTAGCCTTGGAGCTCAAAGCAGACCTTCTTGTTCTGTTAAGTGATGTAGAGGGTCTCTACAGTGGCCCCCCTAGCGATCCACAATCGAAGCTAATCCATACATACATTAAGGAAAGGCTTGAGGGAGTAATTACTTTTGGAGACAAGTCTAGGTTGGGAAGAGGGGGTATGACTGCCAAAGTAAAAGCTGCTGTGTATGCAGCTCAAGCTGGCATCCCTGTCATTATCACCAGTGGCTTTGCTGGTGACAATATCCTCAAAGTACTTCAAGCTGAGCGTATTGGCACCCTCTTCCATCGAGATGCTCATAAATGGGTCCCACTTGGAGAACTTGGCGCACGCGAGATGGCGGTTGCAGCACGAGATAGCTCCAGACGGCTTCAGGCCCTGTCTCCGCAAGAAAGGAATAAAGTTTTGCTGGACATAGCTGATGCTTTGGAAGCAAATGAAAAACAGATCATAATTGAAAATGAAGCCGATGTTGCTGCTTCAATAGAAGCTGGATATGAGAAATCTTTGATATCCCGGTTGGCTCTAAAGCCTGAGAAGGCAAGATACTACTGGATCTTTGATATTGAATAA

Network for GWHGAAZE026633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	15	260	2.60E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12657	ALDH18A1, P5CS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006561	biological_process	proline biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0016491	molecular_function	oxidoreductase activity
GO:0004349	molecular_function	glutamate 5-kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	65.289
	SRR3591706	second leaf	31.105
	SRR3591707	mature leaf	12.663
	SRR3591708	Shoot apex	46.161
	SRR3591709	Stem	21.095
	SRR3591710	White floral bud	16.709
	SRR3591711	White flower	21.225
	SRR3591712	Green floral bud	20.887
	SRR3591713	Yellow flower	12.146
SRP173429	SRR8316895	Juvenile bud stage	17.864
	SRR8316896	Juvenile bud stage	16.904
	SRR8316897	Juvenile bud stage	15.158
	SRR8316894	Third green stage	13.086
	SRR8316900	Third green stage	20.792
	SRR8316901	Third green stage	17.135
	SRR8316898	Complete white stage	5.418
	SRR8316899	Complete white stage	15.294
	SRR8316903	Complete white stage	9.495
	SRR8316902	Silver flowering stage	4.669
	SRR8316904	Silver flowering stage	5.927
	SRR8316905	Silver flowering stage	2.977
	SRR8316906	Gold flowering stage	7.176
	SRR8316907	Gold flowering stage	7.791
	SRR8316908	Gold flowering stage	11.055
SRP132670	SRR6706286	Control	30.702
	SRR6706287	Light intensity 50%	29.100
	SRR6706288	Light intensity 20%	32.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.314
	CNS0095593	Slightly white alabastrum(diploid) 2	7.184
	CNS0095594	Slightly white alabastrum(diploid) 3	7.870
	CNS0095595	Whole white alabastrum(diploid) 2	6.536
	CNS0095596	Whole white alabastrum(diploid) 3	5.659
	CNS0095597	Whole white alabastrum(diploid) 4	4.779
	CNS0095598	Silvery flower (diploied) 1	33.770
	CNS0095599	Silvery flower (diploied) 2	34.268
	CNS0095600	Silvery flower (diploied) 3	18.892
	CNS0095601	Golden flower (diploid) 1	20.107
	CNS0095602	Golden flower (diploid) 2	21.833
	CNS0095603	Golden flower (diploid) 3	19.419
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.807
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.900
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.180
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.733
	CNS0095610	Silvery flower (tetraploid) 1	18.217
	CNS0095611	Silvery flower (tetraploid) 2	18.395
	CNS0095612	Silvery flower (tetraploid) 3	4.922
	CNS0095613	Golden flower (tetraploid) 1	4.661
	CNS0095614	Golden flower (tetraploid) 2	14.059
	CNS0095615	Golden flower (tetraploid) 3	4.763
CRA001975	CRR073297	Stem 1	35.093
	CRR073298	Stem 2	27.878
	CRR073299	Stem 3	28.228
	CRR073300	Leaf 1	19.367
	CRR073301	Leaf 2	20.412
	CRR073302	Leaf 3	19.388
	CRR073303	Juvenile bud 1	14.493
	CRR073304	Juvenile bud 2	10.409
	CRR073305	Juvenile bud 3	18.244
	CRR073306	Third green 1	1.501
	CRR073307	Third green 2	1.367
	CRR073308	Third green 3	2.063
	CRR073309	Second white 1	1.482
	CRR073310	Second white 2	0.950
	CRR073311	Second white 3	1.697
	CRR073312	Silver flowering 1	0.529
	CRR073313	Silver flowering 2	2.589
	CRR073314	Silver flowering 3	1.103
	CRR073315	Gold flowering 1	3.470
	CRR073316	Gold flowering 2	8.550
	CRR073317	Gold flowering 3	7.456
	CRR073318	Tawny withering 1	9.256
	CRR073319	Tawny withering 2	7.592
	CRR073320	Tawny withering 3	10.076