Detail information of GWHGAAZE026606


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007009106.12.4292E-123GATA type zinc finger transcription factor family protein isoform 1 [Theobroma cacao]
Swissprottr|Q9M047|WLI2B_ARATH2E-111LIM domain-containing protein WLIM2b {ECO:0000305}
trEMBLtr|A0A061FTF3|A0A061FTF3_THECC9E-124GATA type zinc finger transcription factor family protein isoform 1 {ECO:0000313|EMBL:EOY17919.1}
TAIR10AT3G55770.54E-88GATA type zinc finger transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene73011567306845+
GWHAAZE00000008mRNA73011567306845+
GWHAAZE00000008exon73011567301290+
GWHAAZE00000008exon73025687302667+
GWHAAZE00000008exon73027597302793+
GWHAAZE00000008exon73029117303000+
GWHAAZE00000008exon73066367306845+
GWHAAZE00000008CDS73011567301290+
GWHAAZE00000008CDS73025687302667+
GWHAAZE00000008CDS73027597302793+
GWHAAZE00000008CDS73029117303000+
GWHAAZE00000008CDS73066367306845+
Transcript Sequence

Network for GWHGAAZE026606

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM10655.80E-13
PF00412.23LIM1081634.20E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLIM

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf279.536
SRR3591706second leaf119.509
SRR3591707mature leaf63.345
SRR3591708Shoot apex179.582
SRR3591709Stem183.303
SRR3591710White floral bud147.913
SRR3591711White flower76.535
SRR3591712Green floral bud168.152
SRR3591713Yellow flower67.015
SRP173429 SRR8316895Juvenile bud stage 75.478
SRR8316896Juvenile bud stage 93.294
SRR8316897Juvenile bud stage 63.429
SRR8316894Third green stage 45.508
SRR8316900Third green stage 147.832
SRR8316901Third green stage 135.013
SRR8316898Complete white stage 63.089
SRR8316899Complete white stage 166.558
SRR8316903Complete white stage 121.514
SRR8316902Silver flowering stage31.312
SRR8316904Silver flowering stage46.623
SRR8316905Silver flowering stage24.489
SRR8316906Gold flowering stage 57.696
SRR8316907Gold flowering stage 49.670
SRR8316908Gold flowering stage 61.670
SRP132670SRR6706286Control155.435
SRR6706287Light intensity 50%161.956
SRR6706288Light intensity 20%188.709
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1117.786
CNS0095593Slightly white alabastrum(diploid) 2141.466
CNS0095594Slightly white alabastrum(diploid) 384.249
CNS0095595Whole white alabastrum(diploid) 2117.969
CNS0095596Whole white alabastrum(diploid) 393.019
CNS0095597Whole white alabastrum(diploid) 4102.781
CNS0095598Silvery flower (diploied) 162.884
CNS0095599Silvery flower (diploied) 272.343
CNS0095600Silvery flower (diploied) 386.714
CNS0095601Golden flower (diploid) 157.075
CNS0095602Golden flower (diploid) 284.091
CNS0095603Golden flower (diploid) 378.447
CNS0095604Slightly white alabastrum(tetraploid) 1107.137
CNS0095605Slightly white alabastrum(tetraploid) 2103.862
CNS0095606Slightly white alabastrum(tetraploid) 3174.798
CNS0095607Whole white alabastrum(tetraploid) 160.874
CNS0095608Whole white alabastrum(tetraploid) 266.908
CNS0095609Whole white alabastrum(tetraploid) 3106.345
CNS0095610Silvery flower (tetraploid) 148.345
CNS0095611Silvery flower (tetraploid) 254.194
CNS0095612Silvery flower (tetraploid) 338.634
CNS0095613Golden flower (tetraploid) 132.057
CNS0095614Golden flower (tetraploid) 252.560
CNS0095615Golden flower (tetraploid) 323.140
CRA001975CRR073297Stem 1148.282
CRR073298Stem 2146.863
CRR073299Stem 3195.567
CRR073300Leaf 1183.188
CRR073301Leaf 2185.033
CRR073302Leaf 3224.457
CRR073303Juvenile bud 1265.323
CRR073304Juvenile bud 2290.359
CRR073305Juvenile bud 3321.226
CRR073306Third green 1202.335
CRR073307Third green 2203.429
CRR073308Third green 3185.645
CRR073309Second white 172.126
CRR073310Second white 242.974
CRR073311Second white 334.769
CRR073312Silver flowering 137.762
CRR073313Silver flowering 249.683
CRR073314Silver flowering 342.484
CRR073315Gold flowering 1123.378
CRR073316Gold flowering 2108.858
CRR073317Gold flowering 3139.693
CRR073318Tawny withering 1258.306
CRR073319Tawny withering 2204.015
CRR073320Tawny withering 3331.800