Detail information of GWHGAAZE026559


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN67856.12.42741E-92hypothetical protein VITISV_041256 [Vitis vinifera]
Swissprottr|Q9FFF9|APC1_ARATH1E-62Anaphase-promoting complex subunit 1
trEMBLtr|A5BF15|A5BF15_VITVI9E-93Putative uncharacterized protein {ECO:0000313|EMBL:CAN67856.1} (Fragment)
TAIR10AT5G05560.15E-50E3 ubiquitin ligase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene65010256504514+
GWHAAZE00000008mRNA65010256504514+
GWHAAZE00000008exon65010256501133+
GWHAAZE00000008exon65012146501374+
GWHAAZE00000008exon65034416503628+
GWHAAZE00000008exon65037256503794+
GWHAAZE00000008exon65044256504514+
GWHAAZE00000008five_prime_UTR65010256501063+
GWHAAZE00000008CDS65010646501133+
GWHAAZE00000008CDS65012146501374+
GWHAAZE00000008CDS65034416503628+
GWHAAZE00000008CDS65037256503794+
GWHAAZE00000008CDS65044256504514+
Transcript Sequence

Network for GWHGAAZE026559

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03348APC1 Ubiquitin mediated proteolysis map04120
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.489
SRR3591706second leaf2.345
SRR3591707mature leaf1.760
SRR3591708Shoot apex5.239
SRR3591709Stem2.828
SRR3591710White floral bud2.044
SRR3591711White flower1.881
SRR3591712Green floral bud1.335
SRR3591713Yellow flower1.155
SRP173429 SRR8316895Juvenile bud stage 1.624
SRR8316896Juvenile bud stage 2.943
SRR8316897Juvenile bud stage 2.292
SRR8316894Third green stage 1.478
SRR8316900Third green stage 4.189
SRR8316901Third green stage 3.127
SRR8316898Complete white stage 0.272
SRR8316899Complete white stage 3.090
SRR8316903Complete white stage 1.327
SRR8316902Silver flowering stage0.581
SRR8316904Silver flowering stage1.376
SRR8316905Silver flowering stage0.526
SRR8316906Gold flowering stage 1.075
SRR8316907Gold flowering stage 0.368
SRR8316908Gold flowering stage 0.869
SRP132670SRR6706286Control2.888
SRR6706287Light intensity 50%2.603
SRR6706288Light intensity 20%3.031
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.127
CNS0095593Slightly white alabastrum(diploid) 20.040
CNS0095594Slightly white alabastrum(diploid) 30.761
CNS0095595Whole white alabastrum(diploid) 20.810
CNS0095596Whole white alabastrum(diploid) 30.295
CNS0095597Whole white alabastrum(diploid) 40.124
CNS0095598Silvery flower (diploied) 10.755
CNS0095599Silvery flower (diploied) 20.822
CNS0095600Silvery flower (diploied) 31.078
CNS0095601Golden flower (diploid) 10.696
CNS0095602Golden flower (diploid) 21.870
CNS0095603Golden flower (diploid) 31.845
CNS0095604Slightly white alabastrum(tetraploid) 10.815
CNS0095605Slightly white alabastrum(tetraploid) 21.496
CNS0095606Slightly white alabastrum(tetraploid) 32.723
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.697
CNS0095609Whole white alabastrum(tetraploid) 32.611
CNS0095610Silvery flower (tetraploid) 11.972
CNS0095611Silvery flower (tetraploid) 22.006
CNS0095612Silvery flower (tetraploid) 30.863
CNS0095613Golden flower (tetraploid) 10.161
CNS0095614Golden flower (tetraploid) 22.104
CNS0095615Golden flower (tetraploid) 30.548
CRA001975CRR073297Stem 12.881
CRR073298Stem 21.736
CRR073299Stem 32.092
CRR073300Leaf 11.845
CRR073301Leaf 21.133
CRR073302Leaf 31.498
CRR073303Juvenile bud 10.070
CRR073304Juvenile bud 20.334
CRR073305Juvenile bud 31.679
CRR073306Third green 10.532
CRR073307Third green 20.000
CRR073308Third green 30.153
CRR073309Second white 10.000
CRR073310Second white 20.051
CRR073311Second white 30.304
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.259
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.197
CRR073317Gold flowering 30.396
CRR073318Tawny withering 10.068
CRR073319Tawny withering 20.439
CRR073320Tawny withering 30.814