Gene detail

Detail information of GWHGAAZE026459

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789874.1	2.7214E-171	PREDICTED: pectinesterase 1-like [Nicotiana sylvestris]
COG	YP_004318098.1	1E-43	pectinesterase
Swissprot	tr\|B2VPR8\|AL11B_OLEEU	4E-162	Pectinesterase 2 (Precursor)
trEMBL	tr\|A0A068UZ94\|A0A068UZ94_COFCA	1E-170	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT1G69940.1	2E-110	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	4990277	4991773	+
GWHAAZE00000008	mRNA	4990277	4991773	+
GWHAAZE00000008	exon	4990277	4990759	+
GWHAAZE00000008	exon	4990847	4991053	+
GWHAAZE00000008	exon	4991195	4991406	+
GWHAAZE00000008	exon	4991614	4991773	+
GWHAAZE00000008	CDS	4990277	4990759	+
GWHAAZE00000008	CDS	4990847	4991053	+
GWHAAZE00000008	CDS	4991195	4991406	+
GWHAAZE00000008	CDS	4991614	4991773	+

Transcript Sequence
>GWHTAAZE026493 ATGTCATGTATTGCTGTTGAAGCAATCGTCACAACAATTCTCCTCTTTGTTCCTATTGTCTTATCGGACGATACTGCACCCATCCCACGAAACAAATTACGAGTAGAGACTTGGTTCAAGAAAAATGTTGGGCCGTATATACACCGAAAGGATACTATAGATCCAAATTTGGCGAAAGCCGAGGCAAGTGCCAAAGTCATTAAAGTGAAAGCAGACGGAAGTGGACGCTTCAAGACGCTGGCTGAAGCCATCCATAGTATTCCGTTTGGGAATAGTGATCGCGTTATAGTGTTGCTTGGAGGTGGAAACTACACAGAGAAAATCAAGATTGATCGAAATAAGCCGTTTGTTACGCTATATGGAGATCCTAAAGATATGCCAACGTTAGTTTATAATGGGGATGCGGTGACATATGGGACTGTGGATAGTGCCACTTTGATAGTTGAATCCGATTACTTTAGCGGTGTTAATTTGAACATTGTGAATTCGTCGCCAAGACCCGATGGAAAAAGGAAAGGAGCACAGGCGGCTGCATTAAGAATTGGCGGAGAGAAGGCTTCATTCTATAACTGTAAAATATACGGGTTCCAAGACACATTATGTGATGACAAGGGAAAGCACTTTTTCAAGGACTGTTACATTGAAGGCACAGTCGATTTTATCTTTGGCGACGGGCGATCTTTATATTTGAATGTTGAAATCCATGTGATACCGGGTGACGGAATGGCAATGATTACGGCACAAGCAAGGAAAGGCGAAGGCTCCGATACTGGCTACTCGTTCGTGCATTGCTCTATAACTGGAACCGGCCGAAATGCAATGTTAGGAAGAGCTTGGATGAGTTATGCGAGGGTGATATTCTCCTATACTGAAATGAGCGACGTAGTGACACCCGAAGGATGGACCATTTTCTTTGGAGAATTTAAGAACACGGGACCAGGATCAAACCCTTTTAGAAGAGCTAAGTTTACCAAGACGCTAAGTGGTGCAGAGGTTAAACCTTACATTAGTCTTGCCTGTATAGAAGGTTCCAAGTGGCTACTTCCACCTACTAAAATTTAA

Network for GWHGAAZE026459

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	68	325	1.30E-53

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.508
	SRR3591707	mature leaf	1.051
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	6.167
	SRR3591711	White flower	0.314
	SRR3591712	Green floral bud	12.230
	SRR3591713	Yellow flower	0.150
SRP173429	SRR8316895	Juvenile bud stage	0.259
	SRR8316896	Juvenile bud stage	0.618
	SRR8316897	Juvenile bud stage	1.149
	SRR8316894	Third green stage	0.790
	SRR8316900	Third green stage	6.726
	SRR8316901	Third green stage	5.313
	SRR8316898	Complete white stage	0.224
	SRR8316899	Complete white stage	0.550
	SRR8316903	Complete white stage	0.280
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.162
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.041
	SRR8316907	Gold flowering stage	0.005
	SRR8316908	Gold flowering stage	0.190
SRP132670	SRR6706286	Control	15.038
	SRR6706287	Light intensity 50%	16.446
	SRR6706288	Light intensity 20%	17.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.109
	CNS0095593	Slightly white alabastrum(diploid) 2	1.375
	CNS0095594	Slightly white alabastrum(diploid) 3	1.039
	CNS0095595	Whole white alabastrum(diploid) 2	2.668
	CNS0095596	Whole white alabastrum(diploid) 3	4.148
	CNS0095597	Whole white alabastrum(diploid) 4	3.123
	CNS0095598	Silvery flower (diploied) 1	0.130
	CNS0095599	Silvery flower (diploied) 2	0.461
	CNS0095600	Silvery flower (diploied) 3	0.191
	CNS0095601	Golden flower (diploid) 1	0.042
	CNS0095602	Golden flower (diploid) 2	0.064
	CNS0095603	Golden flower (diploid) 3	0.069
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.003
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.814
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.313
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.335
	CNS0095610	Silvery flower (tetraploid) 1	0.618
	CNS0095611	Silvery flower (tetraploid) 2	0.805
	CNS0095612	Silvery flower (tetraploid) 3	2.283
	CNS0095613	Golden flower (tetraploid) 1	0.226
	CNS0095614	Golden flower (tetraploid) 2	3.832
	CNS0095615	Golden flower (tetraploid) 3	0.655
CRA001975	CRR073297	Stem 1	1.408
	CRR073298	Stem 2	1.882
	CRR073299	Stem 3	0.552
	CRR073300	Leaf 1	2.670
	CRR073301	Leaf 2	2.630
	CRR073302	Leaf 3	7.259
	CRR073303	Juvenile bud 1	1.271
	CRR073304	Juvenile bud 2	3.530
	CRR073305	Juvenile bud 3	0.789
	CRR073306	Third green 1	1.022
	CRR073307	Third green 2	5.535
	CRR073308	Third green 3	3.050
	CRR073309	Second white 1	0.112
	CRR073310	Second white 2	0.048
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.074
	CRR073316	Gold flowering 2	0.226
	CRR073317	Gold flowering 3	0.592
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000