Gene detail

Detail information of GWHGAAZE026370

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU25024.1	0	hypothetical protein MIMGU_mgv1a005841mg [Erythranthe guttata]
COG	NP_216181.1	0.000000007	Chalcone synthase Pks11
Swissprot	tr\|Q9C6L5\|KCS5_ARATH	7E-120	3-ketoacyl-CoA synthase 5
trEMBL	tr\|A0A022QBN9\|A0A022QBN9_ERYGU	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G25450.1	3E-96	3-ketoacyl-CoA synthase 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3483468	3484571	-
GWHAAZE00000008	mRNA	3483468	3484571	-
GWHAAZE00000008	exon	3483468	3484571	-
GWHAAZE00000008	CDS	3483468	3484571	-

Transcript Sequence
>GWHTAAZE026404 ATGTCAAAGATCCTCTCTTCTTCAGGCCAATCTGAAGAAACCTACGTTCCCCCATCTCTACATTTTATCCCACCAAGGAGTGACCACAAAGAAGCCATTAATGAAGCCCACATGGTTCTCTTCCCTGTATTTGAAGACCTCTTGTCAAAAACAAAACTCTCTCCTCTTGATGTTGACATTCTTATTGTCAATTGCAGTGGCTTTTGCCCTTCTCCTTCTCTCTCATCCATCATTGTTAATAGATTCAAACTGAAGGATGATGTTAGAAGCTTTAGCATCGGTGGTATGGGCTGCAGTGCTAGTGCACTTTGCGTTGACATGGCCCAAAATTTGTTAAAAGTTCACAAGAACTCCAACGCAGTCGTTCTCAGCACGGAAATTTTGTCCCAAGGGTGGTATGCAGGAAAAAATAAGCCCATGATGATCCTTAATTGCCTCTTTCGAATGGGGAGCGCCGGAGTTTTATTAACCAACAAAACAGAATTCAAGAACAGCGCAAAGTACAAACTACTTTTGAGCTTAAGAACACAAAGGGCTTTTGATGACAAAGCCTACAACTCCGCTATAAGAGAGGAGGACTCGAGTGGTCTAACCGGAGTAACTCTCCGGCGAGATTTGTTACATGTTGCCGGAGAGACACTCAGTTCAAACATTTTGTTTCTCGGGTCCTCAATCTTTCCTTTCACCGAGAAAATGAAGTATGCTTTTTCGGTGATGTGGAAAAGATATATCGACAGGTCTGTCGATATATATATGCCAAATTTTATGAATGTCATACATCATTTTTGCTTGCCCACTTCAGGGAAGCCAGTGATAAGAGAAATAGGAAAAAGGTTGAAGCTTGGGGAGAGAGAAATGGAGGCAGCATTGATGACTTTGAATAGATTTGGGAATCAGTCATCTTCTTCATTGTGGTATGAGTTAGCTTACATGGAAGCCAAGGAGAAAGTGAAGAAAGGTGAGAAAGTGTGGCAATTAGGGATGGGGAGTGGGCCCAAGTGTACCAGTCTTGTGTTGGTGTGTAATAGGTCTATTGTTGGAGAGGTTAAGTGGGGCCCATGGTGTGATTGTATTGATGTGTCCAAATCCAATCGTGGTTGTTAA

Network for GWHGAAZE026370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	2	242	3.40E-92
PF08541.11	ACP_syn_III_C	259	339	4.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.170
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.075
	SRR3591710	White floral bud	0.209
	SRR3591711	White flower	0.244
	SRR3591712	Green floral bud	0.201
	SRR3591713	Yellow flower	0.481
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.230
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.159
	SRR8316900	Third green stage	0.144
	SRR8316901	Third green stage	0.160
	SRR8316898	Complete white stage	0.390
	SRR8316899	Complete white stage	0.670
	SRR8316903	Complete white stage	0.325
	SRR8316902	Silver flowering stage	0.119
	SRR8316904	Silver flowering stage	0.043
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.073
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.138
SRP132670	SRR6706286	Control	0.242
	SRR6706287	Light intensity 50%	0.109
	SRR6706288	Light intensity 20%	0.143
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.074
	CNS0095598	Silvery flower (diploied) 1	0.282
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.131
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.046
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.082
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.045
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.281
	CNS0095614	Golden flower (tetraploid) 2	0.073
	CNS0095615	Golden flower (tetraploid) 3	0.266
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.007
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.062
	CRR073316	Gold flowering 2	0.977
	CRR073317	Gold flowering 3	0.058
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000