Gene detail

Detail information of GWHGAAZE026343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003636744.1	0	L-idonate 5-dehydrogenase [Medicago truncatula]
COG	YP_001103186.1	2E-94	zinc-binding dehydrogenase
Swissprot	tr\|Q9FJ95\|DHSO_ARATH	0	Sorbitol dehydrogenase
trEMBL	tr\|G7ZXE4\|G7ZXE4_MEDTR	0	Sorbitol dehydrogenase-like protein {ECO:0000313\|EMBL:KEH26573.1}
TAIR10	AT5G51970.2	8E-172	GroES-like zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3068852	3072590	-
GWHAAZE00000008	mRNA	3068852	3072590	-
GWHAAZE00000008	exon	3072479	3072590	-
GWHAAZE00000008	exon	3072092	3072159	-
GWHAAZE00000008	exon	3070794	3071030	-
GWHAAZE00000008	exon	3069892	3070164	-
GWHAAZE00000008	exon	3069274	3069461	-
GWHAAZE00000008	exon	3068852	3069044	-
GWHAAZE00000008	CDS	3072479	3072590	-
GWHAAZE00000008	CDS	3072092	3072159	-
GWHAAZE00000008	CDS	3070794	3071030	-
GWHAAZE00000008	CDS	3069892	3070164	-
GWHAAZE00000008	CDS	3069274	3069461	-
GWHAAZE00000008	CDS	3068852	3069044	-

Transcript Sequence
>GWHTAAZE026377 ATGGGTAAGGGTGGGATTTCTCAAAACAAAGATGGAGAAGGAGACAACATGGCTGCTTGGCTTCTTGGTGTCAATAACATCAAGATTCAGCCCTTTAATCTCCCTTCTCTTGGACCACATGACGTCAGAGTTGCAATGAAAGCTGTTGGCATCTGTGGCAGTGATGTTCACTACCTCAAGAAAATGAGGTGTGGGGATTTTATAGTAAAAGAACCGATGGTGATCGGGCACGAATGTGCGGGGATCATAGAAGAAGTAGGCAGTGAAGTGAAGCGTCTGGTGGCTGGTGACAGAGTTGCACTCGAGCCCGGCATTAGCTGCTGGCGCTGTAATCTTTGCAAAGAAGGCAGTTACAATCTCTGCACCGAAATGAGGTTTTTCGCCACTCCTCCCATTCATGGTTCTCTTGCCAACAAGATTGTGCATCCGGCAGACTTGTGCTTCAAATTGCCCGACAATGTGAGTTTGGAAGAAGGGGCAATGTGTGAGCCCTTAAGCGTCGGCGTTTATGCGTGTCGCCGAGGTAATGTGGGCCCTGAGAAGAACGTTTTGGTGATCGGAGCTGGCCCTATCGGCCTCGTCACGATGCTCGCTGCTCGTGCTTTTGGGGCACCGAGAATTGTGATTGTTGATGTCGATGATGAGCGTCTATCTGTTGCAAAGAAGCTCGGTGCCAATGGGGTTGTCAAAGACATAGCTGCAGAAGTGGAAAAGATTCATAAAGCAATGGGAGCAGAAGTAAATGTGAGCTTTGATTGCGTTGGCTTTGACAAAACAATGTCGACAGCTCTCACTGCCACTAACCCTGGCGGCAAAGTCTGCCTTGTTGGAATGGGCCACAGCGAGATGAATGTTCCTCTCACCCCTGCTGCTGCTAGGGAGGTTGATATTGTAGGCATCTTTCGGTACAAGAACACATGGCCATTGTGCATAGAGTTTATAAGGAGCGGAAAGATTAACGTGAAGCCTTTGATCACTCATAGGTTTGGGTTCTCGGAGAAGGAGGTCCAAGAAGCTTTTGAGACAAGCGCTCGCGGGGGGAATGCGATTAAGGTCATGTTTAATCTCTAG

Network for GWHGAAZE026343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	39	150	1.60E-30
PF00107.27	ADH_zinc_N	190	314	3.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00008	SORD, gutB	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.340
	SRR3591706	second leaf	0.079
	SRR3591707	mature leaf	0.162
	SRR3591708	Shoot apex	0.550
	SRR3591709	Stem	0.151
	SRR3591710	White floral bud	4.085
	SRR3591711	White flower	1.421
	SRR3591712	Green floral bud	5.824
	SRR3591713	Yellow flower	1.640
SRP173429	SRR8316895	Juvenile bud stage	73.857
	SRR8316896	Juvenile bud stage	136.876
	SRR8316897	Juvenile bud stage	105.999
	SRR8316894	Third green stage	19.131
	SRR8316900	Third green stage	2.527
	SRR8316901	Third green stage	10.418
	SRR8316898	Complete white stage	0.203
	SRR8316899	Complete white stage	0.317
	SRR8316903	Complete white stage	0.134
	SRR8316902	Silver flowering stage	0.137
	SRR8316904	Silver flowering stage	0.093
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.021
	SRR8316907	Gold flowering stage	0.101
	SRR8316908	Gold flowering stage	0.182
SRP132670	SRR6706286	Control	1.956
	SRR6706287	Light intensity 50%	1.722
	SRR6706288	Light intensity 20%	1.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.544
	CNS0095593	Slightly white alabastrum(diploid) 2	11.249
	CNS0095594	Slightly white alabastrum(diploid) 3	78.930
	CNS0095595	Whole white alabastrum(diploid) 2	1.279
	CNS0095596	Whole white alabastrum(diploid) 3	1.390
	CNS0095597	Whole white alabastrum(diploid) 4	1.641
	CNS0095598	Silvery flower (diploied) 1	0.390
	CNS0095599	Silvery flower (diploied) 2	0.397
	CNS0095600	Silvery flower (diploied) 3	0.538
	CNS0095601	Golden flower (diploid) 1	0.621
	CNS0095602	Golden flower (diploid) 2	0.832
	CNS0095603	Golden flower (diploid) 3	1.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.335
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.466
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.228
	CNS0095610	Silvery flower (tetraploid) 1	0.511
	CNS0095611	Silvery flower (tetraploid) 2	0.304
	CNS0095612	Silvery flower (tetraploid) 3	0.601
	CNS0095613	Golden flower (tetraploid) 1	0.539
	CNS0095614	Golden flower (tetraploid) 2	0.195
	CNS0095615	Golden flower (tetraploid) 3	1.250
CRA001975	CRR073297	Stem 1	85.943
	CRR073298	Stem 2	61.889
	CRR073299	Stem 3	73.066
	CRR073300	Leaf 1	0.859
	CRR073301	Leaf 2	3.973
	CRR073302	Leaf 3	8.985
	CRR073303	Juvenile bud 1	0.673
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	0.738
	CRR073306	Third green 1	0.148
	CRR073307	Third green 2	0.692
	CRR073308	Third green 3	0.130
	CRR073309	Second white 1	0.342
	CRR073310	Second white 2	0.338
	CRR073311	Second white 3	0.180
	CRR073312	Silver flowering 1	0.475
	CRR073313	Silver flowering 2	0.096
	CRR073314	Silver flowering 3	1.059
	CRR073315	Gold flowering 1	0.445
	CRR073316	Gold flowering 2	0.991
	CRR073317	Gold flowering 3	0.271
	CRR073318	Tawny withering 1	1.404
	CRR073319	Tawny withering 2	0.428
	CRR073320	Tawny withering 3	0.217