Gene detail

Detail information of GWHGAAZE026342

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003636744.1	0	L-idonate 5-dehydrogenase [Medicago truncatula]
COG	YP_001103186.1	1E-94	zinc-binding dehydrogenase
Swissprot	tr\|Q9FJ95\|DHSO_ARATH	0	Sorbitol dehydrogenase
trEMBL	tr\|G7ZXE4\|G7ZXE4_MEDTR	0	Sorbitol dehydrogenase-like protein {ECO:0000313\|EMBL:KEH26573.1}
TAIR10	AT5G51970.2	3E-177	GroES-like zinc-binding alcohol dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3058824	3061188	-
GWHAAZE00000008	mRNA	3058824	3061188	-
GWHAAZE00000008	exon	3058824	3059016	-
GWHAAZE00000008	exon	3059240	3059427	-
GWHAAZE00000008	exon	3059553	3059843	-
GWHAAZE00000008	exon	3059971	3060207	-
GWHAAZE00000008	exon	3060836	3060903	-
GWHAAZE00000008	exon	3061074	3061188	-
GWHAAZE00000008	CDS	3061074	3061188	-
GWHAAZE00000008	CDS	3060836	3060903	-
GWHAAZE00000008	CDS	3059971	3060207	-
GWHAAZE00000008	CDS	3059553	3059843	-
GWHAAZE00000008	CDS	3059240	3059427	-
GWHAAZE00000008	CDS	3058824	3059016	-

Transcript Sequence
>GWHTAAZE026376 ATGGGTAAGGGAGGGATGTCTCAGAATAAAGATTGTGAAGGAGAGAAGAACATGGCAGCTTGGCTTCTTGGTGTCAATAACCTCAAGATTCAGCCCTTTGATCTCCCTTCTCTTGGACCACATGATGTTAGAGTTGCGATGAAGGCTGTTGGCATATGTGGAAGTGATGTTCACTACCTCAAGAAAATGAGGTGCGGGGATTTTGTAGTGAAAGAACCAATGGTGATCGGGCACGAGTGTGCGGGGGTCATAGAAGAAGTAGGTAGTGAAGTGAAGCATCTGGTGGTTGGTGACAGAGTTGCACTCGAGCCCGGCATTAGCTGCTGGCGCTGCAATCTTTGCAAAGAAGGCAGTTACAATCTCTGCACTGAAATGAAGTTTTTTGCCACTCCTCCAATTCATGGTTCTCTAGCCAATAAGATTGTGCATCCGGCAGACTTATGTTTCAAATTGCCCGATGAAGTGAGTTTGGAAGAAGGTGCAATGTGCGAGCCCTTAAGTGTCGGTGTTTATGCGTGTCGCCGAGGTAACGTGGGCCCCGAGAAGAATGTTTTGGTGATTGGAGCTGGCCCTATAGGCCTCGTCACAATGCTTGCAGCTCGTGCTTTTGGGGCTCCCAGAATTGTGATTGTTGATGTTGACGACCAGCGTCTCTCTGTTGCAAAGAAGCTCGGTGCCGATGGCACTGTCAAAGTGTCAGCTAATAAACAGGACATAGCTGCAGAAGTGGAAGAGATTCATAAAACTATGGGAGCGGAAGTGAATGTAACCTTTGATTGCGTCGGCTTTGACAAAACTATGTCCACAGCTCTCACTGCTACTAACCCGGGTGGCAGAGTCTGCCTTGTTGGAATGGGCCATACCGAGATGGCTGTACCTCTCACCCCGGCTGCTGCTAGGGAGGTTGATATCGTTGGTATCTTTCGCTACAAGAACACGTGGCCATTGTGCATAGAGTTTCTAAGGAGTGGAAAGATTGATGTGAAGCCTTTGATCACTCATAGGTTTGGGTTCTCAGAGAAGGAGGTCCAAGAAGCTTTCGAAACCAGCGCTCGTGGTGGGAATGCCATTAAGGTCATGTTTAATCTCTAG

Network for GWHGAAZE026342

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	40	151	5.90E-31
PF00107.27	ADH_zinc_N	191	321	2.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00008	SORD, gutB	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.398
	SRR3591706	second leaf	2.491
	SRR3591707	mature leaf	5.026
	SRR3591708	Shoot apex	2.028
	SRR3591709	Stem	2.893
	SRR3591710	White floral bud	36.538
	SRR3591711	White flower	46.116
	SRR3591712	Green floral bud	22.262
	SRR3591713	Yellow flower	44.866
SRP173429	SRR8316895	Juvenile bud stage	215.360
	SRR8316896	Juvenile bud stage	481.966
	SRR8316897	Juvenile bud stage	210.332
	SRR8316894	Third green stage	78.900
	SRR8316900	Third green stage	37.358
	SRR8316901	Third green stage	89.024
	SRR8316898	Complete white stage	14.052
	SRR8316899	Complete white stage	10.945
	SRR8316903	Complete white stage	16.235
	SRR8316902	Silver flowering stage	22.753
	SRR8316904	Silver flowering stage	23.844
	SRR8316905	Silver flowering stage	16.805
	SRR8316906	Gold flowering stage	59.889
	SRR8316907	Gold flowering stage	76.481
	SRR8316908	Gold flowering stage	54.198
SRP132670	SRR6706286	Control	11.348
	SRR6706287	Light intensity 50%	12.461
	SRR6706288	Light intensity 20%	8.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	186.541
	CNS0095593	Slightly white alabastrum(diploid) 2	56.648
	CNS0095594	Slightly white alabastrum(diploid) 3	323.557
	CNS0095595	Whole white alabastrum(diploid) 2	12.152
	CNS0095596	Whole white alabastrum(diploid) 3	18.886
	CNS0095597	Whole white alabastrum(diploid) 4	8.879
	CNS0095598	Silvery flower (diploied) 1	19.436
	CNS0095599	Silvery flower (diploied) 2	19.956
	CNS0095600	Silvery flower (diploied) 3	43.285
	CNS0095601	Golden flower (diploid) 1	19.873
	CNS0095602	Golden flower (diploid) 2	28.368
	CNS0095603	Golden flower (diploid) 3	25.186
	CNS0095604	Slightly white alabastrum(tetraploid) 1	99.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	82.729
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.979
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.988
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.738
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.078
	CNS0095610	Silvery flower (tetraploid) 1	56.063
	CNS0095611	Silvery flower (tetraploid) 2	42.862
	CNS0095612	Silvery flower (tetraploid) 3	80.625
	CNS0095613	Golden flower (tetraploid) 1	92.806
	CNS0095614	Golden flower (tetraploid) 2	71.704
	CNS0095615	Golden flower (tetraploid) 3	90.208
CRA001975	CRR073297	Stem 1	226.529
	CRR073298	Stem 2	182.683
	CRR073299	Stem 3	181.275
	CRR073300	Leaf 1	10.814
	CRR073301	Leaf 2	27.475
	CRR073302	Leaf 3	40.054
	CRR073303	Juvenile bud 1	8.819
	CRR073304	Juvenile bud 2	10.415
	CRR073305	Juvenile bud 3	5.713
	CRR073306	Third green 1	18.751
	CRR073307	Third green 2	26.830
	CRR073308	Third green 3	18.785
	CRR073309	Second white 1	35.530
	CRR073310	Second white 2	36.824
	CRR073311	Second white 3	40.982
	CRR073312	Silver flowering 1	35.772
	CRR073313	Silver flowering 2	23.497
	CRR073314	Silver flowering 3	30.030
	CRR073315	Gold flowering 1	3.166
	CRR073316	Gold flowering 2	5.549
	CRR073317	Gold flowering 3	1.839
	CRR073318	Tawny withering 1	1.423
	CRR073319	Tawny withering 2	2.489
	CRR073320	Tawny withering 3	1.591