Gene detail

Detail information of GWHGAAZE026339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007039430.1	1.3361E-177	No lysine kinase 10 isoform 1 [Theobroma cacao]
COG	YP_003797667.1	3E-20	putative serine/threonine protein kinase
Swissprot	tr\|Q944Q0\|WNK8_ARATH	1E-151	Serine/threonine-protein kinase WNK8
trEMBL	tr\|A0A061G2W9\|A0A061G2W9_THECC	5E-178	No lysine kinase 10 isoform 1 {ECO:0000313\|EMBL:EOY23931.1}
TAIR10	AT5G41990.1	3E-117	with no lysine (K) kinase 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	3031265	3032953	+
GWHAAZE00000008	mRNA	3031265	3032953	+
GWHAAZE00000008	exon	3031265	3032953	+
GWHAAZE00000008	CDS	3031265	3032953	+

Transcript Sequence
>GWHTAAZE026373 ATGGAGTCTGAGTTGTTAGTGAAATCAAAAGTGGAACTTGATGAGTACGACGAGGAAGATGGGGTTGTGGAGATATCTCCTGATGGTCAATTTGTACGCTACGATGAGGTTTTGGGTGGTGGATCCTTTAAGGTTGTTTATAAGGGTTTTGATCAAGTGAATGGGATTGAAATTGCTTGGAACCAGATATCTATAAACGATGATGTTTTGCTGTTACCTGCACATCGAGAGAGGTTACTTGCAGAGGCTGCACTTGTGAAGTCACTCAGGCATGGAAATATCACCAAGTGCTACTGCTCTTGGGTTGACAACGAGAACAAAACCATCAACATGATCACCGAGCTGTGTTGTTCTGGGAATCTGAGGGATTTTCGAAGGAAGCATAAGGGTGTTGATATCAAGGCAATCAAGAACTGGGCCAGGCAGATTCTTAAAGGGTTATGCTATCTCCATAGTCTTAATCCTCCCATTGTTCATAGAGATTTGAAGTGTGACAATGTGTTTGTTAATGGCAATCATGCAGAGGTTAAGATTGGGGATCTTGGGTTTGCTACTATTTTGCATGAGGGTGTTGCCCGGAGTGTGATTGGCACGCCTGAGTTTATGGCTCCGGAGATATTTGATGATGAATACAATGAGCTTGTTGATATATATGCTTTCGGCATGTGTATGCTAGAATTGGTGACTTCTGAGTATCCGTATAGTGAATGCAAAAATGTGGGGCACGTCTATAAGAAGGTGATTTCAGGTGAAAAGCCTATTGCTCTTGGTAAAGTGAAGGATCCCAATGTAAAGCAGTTTATAGAGAAGTGTCTTGTTCCTGCATCTCAGAGGTTGCCTGCAGTGGAGCTTTTGAAAGATCCTTTTCTTTCATGTGAGAATTCGAAGGAGCTACTATCTGTGCCCAAACCTTTGAACCTGCCAAATCTTGATTCCCAAACTTCCATGGAGATAGACCCTAACTACCCTAACTCAAGTCAGCTTTCGGTTTCGGTTGGCAGTTGCACGAGTGAAACTCGTGTTTGGACCCCAGAACTTCGGTTATGGCATGGAGGGAAAGAATTCAGATTAAGAGGGAAGAAACTCGATGACGACTCTATCTCGTTTATCTTCAGTTTCACTTGCTTGCAAAAGGTGAAGAAGTATGAGTTTGTCTTTGATCTTCATGGTGATACAACGCTTTCGGTGGCTCGTGAAATGATTGAACTGGAGTTATCTGAAAACAAGGTCTCTATTTTATCGATTGAAGACGTGGCTCCCATAGCTGACTTGATGGACAGTTTGCTTTCAGAACTTGCACCCAACTTCAAACCTTCCGGTTATAGTGGAGTGAATTTTTTGCATGACAGTTCTATTGTACTTCAAAGAGACAAAGTGGAGATTCATGGTGCTGAAGAATTGGAGAGATGTGGAGTTAGTGTTGGTGAATCGGCTATGTCAAGTGAATTCACAAGAAACTCGGAGGTGTCCTTTGTTCATTCATGCAGTACCGTATCTGACTATTCGAGCTTGGACAATTCGTATCCAATGCAGACAGATAAGGATGAGTTAAATGGACTGAAACTGGAGCTTGATGCAATTGAATTTCAGTTTCAGCAGTGTTTCCGGGAACTCTTGCGGAAGAGGGAGGAGGCAAAGGAGAATGTCAAGAAGAGGTGGATTACAAACTTGACTATGTCTGCTGTTTGA

Network for GWHGAAZE026339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	35	290	9.60E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	WNK_NRBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.532
	SRR3591706	second leaf	7.109
	SRR3591707	mature leaf	11.224
	SRR3591708	Shoot apex	9.971
	SRR3591709	Stem	20.221
	SRR3591710	White floral bud	14.895
	SRR3591711	White flower	19.293
	SRR3591712	Green floral bud	17.064
	SRR3591713	Yellow flower	12.771
SRP173429	SRR8316895	Juvenile bud stage	8.792
	SRR8316896	Juvenile bud stage	11.725
	SRR8316897	Juvenile bud stage	5.892
	SRR8316894	Third green stage	5.237
	SRR8316900	Third green stage	11.285
	SRR8316901	Third green stage	12.107
	SRR8316898	Complete white stage	4.919
	SRR8316899	Complete white stage	20.763
	SRR8316903	Complete white stage	8.249
	SRR8316902	Silver flowering stage	6.818
	SRR8316904	Silver flowering stage	7.433
	SRR8316905	Silver flowering stage	4.706
	SRR8316906	Gold flowering stage	16.420
	SRR8316907	Gold flowering stage	12.185
	SRR8316908	Gold flowering stage	13.274
SRP132670	SRR6706286	Control	7.824
	SRR6706287	Light intensity 50%	6.778
	SRR6706288	Light intensity 20%	8.799
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.205
	CNS0095593	Slightly white alabastrum(diploid) 2	12.698
	CNS0095594	Slightly white alabastrum(diploid) 3	13.917
	CNS0095595	Whole white alabastrum(diploid) 2	11.628
	CNS0095596	Whole white alabastrum(diploid) 3	10.211
	CNS0095597	Whole white alabastrum(diploid) 4	8.871
	CNS0095598	Silvery flower (diploied) 1	20.142
	CNS0095599	Silvery flower (diploied) 2	15.659
	CNS0095600	Silvery flower (diploied) 3	20.461
	CNS0095601	Golden flower (diploid) 1	15.351
	CNS0095602	Golden flower (diploid) 2	16.489
	CNS0095603	Golden flower (diploid) 3	16.247
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.677
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.884
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.174
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.301
	CNS0095610	Silvery flower (tetraploid) 1	12.249
	CNS0095611	Silvery flower (tetraploid) 2	12.560
	CNS0095612	Silvery flower (tetraploid) 3	13.895
	CNS0095613	Golden flower (tetraploid) 1	9.043
	CNS0095614	Golden flower (tetraploid) 2	9.665
	CNS0095615	Golden flower (tetraploid) 3	12.087
CRA001975	CRR073297	Stem 1	13.502
	CRR073298	Stem 2	11.832
	CRR073299	Stem 3	10.447
	CRR073300	Leaf 1	15.625
	CRR073301	Leaf 2	11.254
	CRR073302	Leaf 3	12.154
	CRR073303	Juvenile bud 1	13.402
	CRR073304	Juvenile bud 2	10.913
	CRR073305	Juvenile bud 3	17.053
	CRR073306	Third green 1	5.829
	CRR073307	Third green 2	6.308
	CRR073308	Third green 3	5.529
	CRR073309	Second white 1	12.756
	CRR073310	Second white 2	10.426
	CRR073311	Second white 3	7.813
	CRR073312	Silver flowering 1	10.622
	CRR073313	Silver flowering 2	13.358
	CRR073314	Silver flowering 3	8.778
	CRR073315	Gold flowering 1	8.898
	CRR073316	Gold flowering 2	12.486
	CRR073317	Gold flowering 3	11.779
	CRR073318	Tawny withering 1	10.308
	CRR073319	Tawny withering 2	15.592
	CRR073320	Tawny withering 3	10.474