Detail information of GWHGAAZE026314


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002278915.10PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Vitis vinifera]
COGYP_001958273.12E-15hypothetical protein Aasi_1217
Swissprottr|Q4FE45|XB33_ARATH0E3 ubiquitin-protein ligase XBAT33
trEMBLtr|D7TMU6|D7TMU6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31819.3}
TAIR10AT5G07270.10XB3 ortholog 3 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene25805832587905-
GWHAAZE00000008mRNA25805832587905-
GWHAAZE00000008exon25877292587905-
GWHAAZE00000008exon25873212587380-
GWHAAZE00000008exon25870522587123-
GWHAAZE00000008exon25867632586947-
GWHAAZE00000008exon25843872584547-
GWHAAZE00000008exon25842372584290-
GWHAAZE00000008exon25841322584147-
GWHAAZE00000008exon25835142583657-
GWHAAZE00000008exon25823772582465-
GWHAAZE00000008exon25805832581139-
GWHAAZE00000008CDS25877292587905-
GWHAAZE00000008CDS25873212587380-
GWHAAZE00000008CDS25870522587123-
GWHAAZE00000008CDS25867632586947-
GWHAAZE00000008CDS25843872584547-
GWHAAZE00000008CDS25842372584290-
GWHAAZE00000008CDS25841322584147-
GWHAAZE00000008CDS25835142583657-
GWHAAZE00000008CDS25823772582465-
GWHAAZE00000008CDS25805832581139-
Transcript Sequence

Network for GWHGAAZE026314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2491322.90E-17
PF00023.31Ank1782080.0001
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.302
SRR3591706second leaf8.462
SRR3591707mature leaf6.243
SRR3591708Shoot apex10.807
SRR3591709Stem21.055
SRR3591710White floral bud52.720
SRR3591711White flower13.319
SRR3591712Green floral bud19.443
SRR3591713Yellow flower11.078
SRP173429 SRR8316895Juvenile bud stage 6.764
SRR8316896Juvenile bud stage 9.873
SRR8316897Juvenile bud stage 4.369
SRR8316894Third green stage 4.218
SRR8316900Third green stage 14.013
SRR8316901Third green stage 15.715
SRR8316898Complete white stage 3.501
SRR8316899Complete white stage 8.427
SRR8316903Complete white stage 6.013
SRR8316902Silver flowering stage5.387
SRR8316904Silver flowering stage8.837
SRR8316905Silver flowering stage3.104
SRR8316906Gold flowering stage 10.929
SRR8316907Gold flowering stage 9.794
SRR8316908Gold flowering stage 8.459
SRP132670SRR6706286Control13.864
SRR6706287Light intensity 50%14.166
SRR6706288Light intensity 20%13.200
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.113
CNS0095593Slightly white alabastrum(diploid) 26.291
CNS0095594Slightly white alabastrum(diploid) 36.905
CNS0095595Whole white alabastrum(diploid) 215.556
CNS0095596Whole white alabastrum(diploid) 317.202
CNS0095597Whole white alabastrum(diploid) 422.224
CNS0095598Silvery flower (diploied) 18.234
CNS0095599Silvery flower (diploied) 211.176
CNS0095600Silvery flower (diploied) 313.509
CNS0095601Golden flower (diploid) 18.948
CNS0095602Golden flower (diploid) 214.047
CNS0095603Golden flower (diploid) 314.328
CNS0095604Slightly white alabastrum(tetraploid) 18.369
CNS0095605Slightly white alabastrum(tetraploid) 29.490
CNS0095606Slightly white alabastrum(tetraploid) 313.486
CNS0095607Whole white alabastrum(tetraploid) 116.233
CNS0095608Whole white alabastrum(tetraploid) 223.979
CNS0095609Whole white alabastrum(tetraploid) 313.790
CNS0095610Silvery flower (tetraploid) 19.717
CNS0095611Silvery flower (tetraploid) 212.877
CNS0095612Silvery flower (tetraploid) 321.468
CNS0095613Golden flower (tetraploid) 18.829
CNS0095614Golden flower (tetraploid) 29.596
CNS0095615Golden flower (tetraploid) 317.692
CRA001975CRR073297Stem 116.666
CRR073298Stem 214.539
CRR073299Stem 316.103
CRR073300Leaf 121.841
CRR073301Leaf 215.306
CRR073302Leaf 311.510
CRR073303Juvenile bud 122.691
CRR073304Juvenile bud 218.123
CRR073305Juvenile bud 315.179
CRR073306Third green 124.695
CRR073307Third green 223.172
CRR073308Third green 322.263
CRR073309Second white 114.896
CRR073310Second white 215.650
CRR073311Second white 317.793
CRR073312Silver flowering 129.258
CRR073313Silver flowering 236.804
CRR073314Silver flowering 323.769
CRR073315Gold flowering 112.631
CRR073316Gold flowering 29.574
CRR073317Gold flowering 38.245
CRR073318Tawny withering 128.725
CRR073319Tawny withering 222.428
CRR073320Tawny withering 330.918