Gene detail

Detail information of GWHGAAZE026308

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006353309.1	1.34793E-93	PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q8GXS3\|CFIS2_ARATH	1E-86	Pre-mRNA cleavage factor Im 25 kDa subunit 2 {ECO:0000303\|PubMed:18479511}
trEMBL	tr\|K4BF61\|K4BF61_SOLLC	1E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g025880.2.1}
TAIR10	AT4G25550.1	6E-69	Cleavage/polyadenylation specificity factor, 25kDa subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	2515682	2518205	-
GWHAAZE00000008	mRNA	2515682	2518205	-
GWHAAZE00000008	exon	2518082	2518205	-
GWHAAZE00000008	exon	2517426	2517499	-
GWHAAZE00000008	exon	2517148	2517234	-
GWHAAZE00000008	exon	2516877	2516987	-
GWHAAZE00000008	exon	2515682	2516081	-
GWHAAZE00000008	CDS	2518082	2518205	-
GWHAAZE00000008	CDS	2517426	2517499	-
GWHAAZE00000008	CDS	2517148	2517234	-
GWHAAZE00000008	CDS	2516877	2516987	-
GWHAAZE00000008	CDS	2516010	2516081	-
GWHAAZE00000008	three_prime_UTR	2515682	2516009	-

Transcript Sequence
>GWHTAAZE026342 ATGTTTCAAATAAATGACCTGTGTTTACAGGTACAGGAGCATAATCATGCCCATATTCTCCTTTTGCAAATTGGGAACACATTTTGCAAACTTCCTGGTGGGCGTCTGAAGCCAGGAGAGGATGAGATTGAGGGCTTGAAAAGAAAACTCTCCAGCAAACTTGCGACTGATAATCCTGCCATTCAGCCAAATTGGCAGATAGGCGAGTGCGTAGGTATCTGGTGGAGACCAAATTTTGAAACCATACTATATCCATATTGTCCTCCCCACATAACAAAACCCAAGGAGTGCAAAAAGCTTTTTATTGTTCACTTGTCTGACAGAGAGTACTTTGCAGTGCCGAAAAATTTCAAACTTCTTGCTGTTCCATTGTTTGAACTGTATGATAATGTTCAGAGATATGGGTCTGTTATGGCAAACATTCCACAGCAGCTGTCTAGGTTCAATTTCAACCTGGTCCACACATAACATTTGATGCTAATGTTCCGAAGAGCTACTACAACTTAGATACAAGAATATATTAATTGTGGTTAGGGTGGTGGTCCTAATTTTAGCGGAAAGCAACTTTCACTTGTCTTTTATGATGGTACTTCTATACTTCAATTGTTGTATTACTATGGGTAAATCTTCTTAGTAGTAGTGTGTATGGGAGAGAGAAGGTCCGTTTACTCGGAACAAGGAAAGATGAATAGGCACTGATCTGTTATCTGATGATTACTTTGGTTTGTTTTGTGTATTAATGTTACCACCCTACACTAGCGGTCCCTCTCTTCTTTCATGATATCTGAGATTTTTT

Network for GWHGAAZE026308

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13869.7	NUDIX_2	9	148	8.20E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14397	NUDT21, CPSF5, CFIM25	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0006378	biological_process	mRNA polyadenylation
GO:0005849	cellular_component	mRNA cleavage factor complex
GO:0003729	molecular_function	mRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.445
	SRR3591706	second leaf	1.737
	SRR3591707	mature leaf	1.254
	SRR3591708	Shoot apex	5.738
	SRR3591709	Stem	0.838
	SRR3591710	White floral bud	4.758
	SRR3591711	White flower	6.055
	SRR3591712	Green floral bud	4.373
	SRR3591713	Yellow flower	6.519
SRP173429	SRR8316895	Juvenile bud stage	3.436
	SRR8316896	Juvenile bud stage	4.656
	SRR8316897	Juvenile bud stage	3.230
	SRR8316894	Third green stage	1.629
	SRR8316900	Third green stage	4.193
	SRR8316901	Third green stage	3.958
	SRR8316898	Complete white stage	2.239
	SRR8316899	Complete white stage	5.031
	SRR8316903	Complete white stage	2.971
	SRR8316902	Silver flowering stage	1.346
	SRR8316904	Silver flowering stage	1.671
	SRR8316905	Silver flowering stage	0.615
	SRR8316906	Gold flowering stage	1.898
	SRR8316907	Gold flowering stage	2.652
	SRR8316908	Gold flowering stage	2.246
SRP132670	SRR6706286	Control	2.834
	SRR6706287	Light intensity 50%	2.867
	SRR6706288	Light intensity 20%	2.801
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.834
	CNS0095593	Slightly white alabastrum(diploid) 2	5.193
	CNS0095594	Slightly white alabastrum(diploid) 3	8.841
	CNS0095595	Whole white alabastrum(diploid) 2	6.805
	CNS0095596	Whole white alabastrum(diploid) 3	9.124
	CNS0095597	Whole white alabastrum(diploid) 4	7.710
	CNS0095598	Silvery flower (diploied) 1	11.428
	CNS0095599	Silvery flower (diploied) 2	10.387
	CNS0095600	Silvery flower (diploied) 3	7.032
	CNS0095601	Golden flower (diploid) 1	7.614
	CNS0095602	Golden flower (diploid) 2	8.542
	CNS0095603	Golden flower (diploid) 3	8.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.747
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.299
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.538
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.162
	CNS0095610	Silvery flower (tetraploid) 1	6.735
	CNS0095611	Silvery flower (tetraploid) 2	7.519
	CNS0095612	Silvery flower (tetraploid) 3	6.755
	CNS0095613	Golden flower (tetraploid) 1	7.467
	CNS0095614	Golden flower (tetraploid) 2	6.375
	CNS0095615	Golden flower (tetraploid) 3	3.841
CRA001975	CRR073297	Stem 1	5.916
	CRR073298	Stem 2	3.635
	CRR073299	Stem 3	4.839
	CRR073300	Leaf 1	4.813
	CRR073301	Leaf 2	3.564
	CRR073302	Leaf 3	3.817
	CRR073303	Juvenile bud 1	4.778
	CRR073304	Juvenile bud 2	3.588
	CRR073305	Juvenile bud 3	3.902
	CRR073306	Third green 1	1.078
	CRR073307	Third green 2	1.187
	CRR073308	Third green 3	0.936
	CRR073309	Second white 1	1.198
	CRR073310	Second white 2	1.091
	CRR073311	Second white 3	1.214
	CRR073312	Silver flowering 1	0.757
	CRR073313	Silver flowering 2	2.601
	CRR073314	Silver flowering 3	0.606
	CRR073315	Gold flowering 1	3.200
	CRR073316	Gold flowering 2	2.493
	CRR073317	Gold flowering 3	2.162
	CRR073318	Tawny withering 1	4.473
	CRR073319	Tawny withering 2	1.770
	CRR073320	Tawny withering 3	2.522