Gene detail

Detail information of GWHGAAZE026205

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07930.1	7.59801E-65	unnamed protein product [Coffea canephora]
Swissprot	tr\|O23461\|ARAK_ARATH	2E-55	L-arabinokinase
trEMBL	tr\|A0A068UH85\|A0A068UH85_COFCA	3E-65	Coffea canephora DH200=94 genomic scaffold, scaffold_29 {ECO:0000313\|EMBL:CDP07930.1}
TAIR10	AT4G16130.1	7E-50	arabinose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	75404536	75407426	+
GWHAAZE00000007	mRNA	75404536	75407426	+
GWHAAZE00000007	exon	75404536	75404711	+
GWHAAZE00000007	exon	75404822	75404990	+
GWHAAZE00000007	exon	75405280	75405363	+
GWHAAZE00000007	exon	75406669	75406912	+
GWHAAZE00000007	exon	75407050	75407128	+
GWHAAZE00000007	exon	75407303	75407426	+
GWHAAZE00000007	CDS	75404536	75404711	+
GWHAAZE00000007	CDS	75404822	75404990	+
GWHAAZE00000007	CDS	75405280	75405363	+
GWHAAZE00000007	CDS	75406669	75406912	+
GWHAAZE00000007	CDS	75407050	75407128	+
GWHAAZE00000007	CDS	75407303	75407426	+

Transcript Sequence
>GWHTAAZE026239 GTTAGTGGATCGAGGAGATTGCGTGATGCAATAGTTCTTGGGTACCAACTACAAAGAGCCCCTGGAAGAGATTTGTGCATCCCTGAATGGTACGCAAATGCTGAAAATGAGCTTGGTCTTCGTACAGGATCACCTGGTGGTGCTACAACACAGCAAACAACCTTCCTCACAAACTCATACACCGAGGACTTTGAGATTCTCCATGGAGATCGTTTGGGTCTTCCTGATACAATGAGTTTCTTGAAGAGCTTGGCAGAATTAGATGACGTCTATGATTCTGTAAAGAATACTGAGAAGCGCCAGATTCGGGAGCGCATGGCTGCTGCCAGTCTCTTCAACTGGGAGGAAGACATCATTGTGGCAAGAGCACCTGGAAGGTTGGATGTAGTGGGTGGAATCGCTGACTACTCAGGCAGCCTTGTCTTGCAGGGTTTACGTTTCTTCTTCTGGGGTGAGGGCTGTGTAAGATTGATAAGCAGGATAGGTGAGATTTACAGCAATAGATCGAGGGAGTTTAGATTCGAACACAAAAGGTTTTCGTTTGAGATAGACAATGGAGGTTCCTTGGTTATCATTACAGAAACAAACCGTCAGAGGTCATATACAAGAAGAATCGACTTTGGTGGTATGTTCTGGCTTATGGAAGGGTTGTATTCGGCTGCAAGAGGCTTCGCTGGTAACAGAGGTGAGGGTTGGAGGGGTGTGGTTGATAGATTGAAGCAGATGATGTTTTCCTCGAGTCCAGATCCCAAGAAGAAGAGCAGCAGCAAGCTGAAGCAAGAAAGTAGTAAACTGAGAACAGAAAACTGTAGAGAAATGCCTGCCACTACGAGCCAAACTACACCAAAAATTGCCGCTGCTGTAGCTAAAGCATAG

Network for GWHGAAZE026205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12446	E2.7.1.46	Metabolic pathways	map01100
K12446	E2.7.1.46	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.512
	SRR3591706	second leaf	3.104
	SRR3591707	mature leaf	7.283
	SRR3591708	Shoot apex	3.987
	SRR3591709	Stem	8.091
	SRR3591710	White floral bud	6.009
	SRR3591711	White flower	8.865
	SRR3591712	Green floral bud	3.593
	SRR3591713	Yellow flower	12.253
SRP173429	SRR8316895	Juvenile bud stage	6.319
	SRR8316896	Juvenile bud stage	8.436
	SRR8316897	Juvenile bud stage	3.206
	SRR8316894	Third green stage	3.161
	SRR8316900	Third green stage	5.530
	SRR8316901	Third green stage	5.823
	SRR8316898	Complete white stage	3.077
	SRR8316899	Complete white stage	9.339
	SRR8316903	Complete white stage	6.551
	SRR8316902	Silver flowering stage	4.881
	SRR8316904	Silver flowering stage	8.704
	SRR8316905	Silver flowering stage	3.314
	SRR8316906	Gold flowering stage	12.775
	SRR8316907	Gold flowering stage	10.949
	SRR8316908	Gold flowering stage	9.500
SRP132670	SRR6706286	Control	10.452
	SRR6706287	Light intensity 50%	9.460
	SRR6706288	Light intensity 20%	10.962
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.139
	CNS0095593	Slightly white alabastrum(diploid) 2	4.059
	CNS0095594	Slightly white alabastrum(diploid) 3	5.277
	CNS0095595	Whole white alabastrum(diploid) 2	3.486
	CNS0095596	Whole white alabastrum(diploid) 3	2.775
	CNS0095597	Whole white alabastrum(diploid) 4	3.856
	CNS0095598	Silvery flower (diploied) 1	9.202
	CNS0095599	Silvery flower (diploied) 2	7.471
	CNS0095600	Silvery flower (diploied) 3	17.301
	CNS0095601	Golden flower (diploid) 1	9.502
	CNS0095602	Golden flower (diploid) 2	17.722
	CNS0095603	Golden flower (diploid) 3	16.236
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.174
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.010
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.980
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.619
	CNS0095610	Silvery flower (tetraploid) 1	15.936
	CNS0095611	Silvery flower (tetraploid) 2	22.031
	CNS0095612	Silvery flower (tetraploid) 3	15.947
	CNS0095613	Golden flower (tetraploid) 1	11.461
	CNS0095614	Golden flower (tetraploid) 2	14.322
	CNS0095615	Golden flower (tetraploid) 3	21.008
CRA001975	CRR073297	Stem 1	11.207
	CRR073298	Stem 2	13.111
	CRR073299	Stem 3	10.513
	CRR073300	Leaf 1	11.879
	CRR073301	Leaf 2	12.111
	CRR073302	Leaf 3	10.228
	CRR073303	Juvenile bud 1	9.797
	CRR073304	Juvenile bud 2	7.604
	CRR073305	Juvenile bud 3	15.190
	CRR073306	Third green 1	3.845
	CRR073307	Third green 2	4.276
	CRR073308	Third green 3	4.665
	CRR073309	Second white 1	10.960
	CRR073310	Second white 2	7.222
	CRR073311	Second white 3	9.605
	CRR073312	Silver flowering 1	6.110
	CRR073313	Silver flowering 2	5.456
	CRR073314	Silver flowering 3	5.436
	CRR073315	Gold flowering 1	6.901
	CRR073316	Gold flowering 2	9.609
	CRR073317	Gold flowering 3	6.307
	CRR073318	Tawny withering 1	6.312
	CRR073319	Tawny withering 2	3.270
	CRR073320	Tawny withering 3	4.719