Gene detail

Detail information of GWHGAAZE026172

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630987.1	0	PREDICTED: probable sarcosine oxidase [Nicotiana tomentosiformis]
COG	YP_827124.1	4E-52	N-methyltryptophan oxidase
Swissprot	tr\|Q9SJA7\|SOX_ARATH	0	Probable sarcosine oxidase
trEMBL	tr\|A0A068UW02\|A0A068UW02_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_66 {ECO:0000313\|EMBL:CDP12459.1}
TAIR10	AT2G24580.1	1E-152	FAD-dependent oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74809987	74811195	+
GWHAAZE00000007	mRNA	74809987	74811195	+
GWHAAZE00000007	exon	74809987	74811195	+
GWHAAZE00000007	CDS	74809987	74811195	+

Transcript Sequence
>GWHTAAZE026206 ATGGGAAGCTGTACAGCTTATCAAACATCCAAACGAGGCCTTAAAACTCTCCTCCTCGACCAATTCGATTTCTTGCATCACCGTGGATCTTCCCACGGTGAATCTCGTACTCTCCGAACGACTTACCCTGAAGACTACTATTCTTCCATGGTTCTACAATCACTTCAACTTTGGAAAGAAGCTGAACAAGAAATCGGCTTCAGGGTTTACTTCAAAACCCCACAATTTGACATGGGTCCATCCGATAACAAGAGTTTGAATTCCGTAATTGATAGTTGCAAGAAAAACTCGGTTTCTCATAGGGTCCTTAACGCCCACCAAGTGTTCGACGAAATGTCTGGCAGAATTCAAATACCAGAGGACTGGATAGGCGTTTCAACTGAGTTTGGGGGTGTTATTAAGCCAACAAAGGCAGTGTCTATGTATCAAACACTTGCCCATAAACATGGCTGTGTGCTTAGAGACAACAAACAAGTGGTCGACATCAAGAACGATGATTTGAGAGGTGGGATTTTGGTGTGTACAAGCAATGGTGAAACATTTTGGGGTGACAAATGTGTTGTCACTGTTGGGGCTTGGATGAAGAAATTGATTCAAAATGTAACTGGGATTGTTCTTCCAATCCAACCATTGGAAACGCAGGTTTGTTATTGGAAAATTAAAGATGGGTTCGAGGATGAATTTGATATCACAGGGGGATTCCCGACGTTTGCGAGTTACGGTGAGCCGTACATTTATGGTACGCCGTCGTTTGAGTTTCCGGGACTGATAAAGATTCCGGTGCACGGTGGCCGGCAGTGTGACCCGGACAAAAGGACATGGGAAATTGCTCCGGTGGTACTGGAGACGTTGAGGAATTGGATCAAAGGGAGATTTAGGGACCGAGTCGACTCAACAAGGCCTATTTTGACTCAGTCTTGTTTATATTCTATGACCCCAGACGAGGATTTTGTGATTGATTTCTTGGGTGGAGAATTTGGGAAGAATGTGGTGGTCGCCGGTGGATTTTCCGGCCATGGGTTCAAGATGGGGCCGGTAGTGGGGAGGATATTGGCTGATCTTGTGTTGTGTGGAGAGGCTAAAGGGGTTGACTTGAAGCACTTTGAGATTGGAAGATTTGACGGGAATCCTAAAGGGAATGTGAAAGAGTTTGAGGATCAAGTAACTTTGAGTGATCATTTGATAGCTCCGTCATGCAAAATTGATTGA

Network for GWHGAAZE026172

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01266.25	DAO	1	354	4.80E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00306	PIPOX	Metabolic pathways	map01100
		Glycine, serine and threonine metabolism	map00260
		Lysine degradation	map00310
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.522
	SRR3591706	second leaf	31.633
	SRR3591707	mature leaf	16.772
	SRR3591708	Shoot apex	32.638
	SRR3591709	Stem	12.405
	SRR3591710	White floral bud	12.561
	SRR3591711	White flower	11.664
	SRR3591712	Green floral bud	14.401
	SRR3591713	Yellow flower	3.455
SRP173429	SRR8316895	Juvenile bud stage	13.914
	SRR8316896	Juvenile bud stage	14.524
	SRR8316897	Juvenile bud stage	6.931
	SRR8316894	Third green stage	6.838
	SRR8316900	Third green stage	14.764
	SRR8316901	Third green stage	16.526
	SRR8316898	Complete white stage	2.912
	SRR8316899	Complete white stage	25.890
	SRR8316903	Complete white stage	5.437
	SRR8316902	Silver flowering stage	1.221
	SRR8316904	Silver flowering stage	5.551
	SRR8316905	Silver flowering stage	0.796
	SRR8316906	Gold flowering stage	2.638
	SRR8316907	Gold flowering stage	2.132
	SRR8316908	Gold flowering stage	7.121
SRP132670	SRR6706286	Control	34.638
	SRR6706287	Light intensity 50%	37.725
	SRR6706288	Light intensity 20%	38.580
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.301
	CNS0095593	Slightly white alabastrum(diploid) 2	12.645
	CNS0095594	Slightly white alabastrum(diploid) 3	13.889
	CNS0095595	Whole white alabastrum(diploid) 2	9.422
	CNS0095596	Whole white alabastrum(diploid) 3	7.288
	CNS0095597	Whole white alabastrum(diploid) 4	13.715
	CNS0095598	Silvery flower (diploied) 1	7.417
	CNS0095599	Silvery flower (diploied) 2	11.041
	CNS0095600	Silvery flower (diploied) 3	3.580
	CNS0095601	Golden flower (diploid) 1	7.957
	CNS0095602	Golden flower (diploid) 2	5.764
	CNS0095603	Golden flower (diploid) 3	4.939
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.244
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.598
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.905
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.944
	CNS0095610	Silvery flower (tetraploid) 1	9.711
	CNS0095611	Silvery flower (tetraploid) 2	4.511
	CNS0095612	Silvery flower (tetraploid) 3	5.969
	CNS0095613	Golden flower (tetraploid) 1	1.898
	CNS0095614	Golden flower (tetraploid) 2	15.777
	CNS0095615	Golden flower (tetraploid) 3	4.689
CRA001975	CRR073297	Stem 1	11.533
	CRR073298	Stem 2	12.360
	CRR073299	Stem 3	15.123
	CRR073300	Leaf 1	20.299
	CRR073301	Leaf 2	18.168
	CRR073302	Leaf 3	18.289
	CRR073303	Juvenile bud 1	29.368
	CRR073304	Juvenile bud 2	13.957
	CRR073305	Juvenile bud 3	29.221
	CRR073306	Third green 1	29.916
	CRR073307	Third green 2	25.864
	CRR073308	Third green 3	33.501
	CRR073309	Second white 1	3.383
	CRR073310	Second white 2	6.189
	CRR073311	Second white 3	3.333
	CRR073312	Silver flowering 1	2.449
	CRR073313	Silver flowering 2	1.497
	CRR073314	Silver flowering 3	2.833
	CRR073315	Gold flowering 1	15.054
	CRR073316	Gold flowering 2	19.816
	CRR073317	Gold flowering 3	21.631
	CRR073318	Tawny withering 1	9.732
	CRR073319	Tawny withering 2	12.632
	CRR073320	Tawny withering 3	2.040