Gene detail

Detail information of GWHGAAZE026164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08328.1	0	unnamed protein product [Coffea canephora]
COG	YP_005367780.1	1E-85	putative squalene--hopene cyclase
Swissprot	tr\|E7DN63\|BAMS_SOLLC	0	Beta-amyrin synthase
trEMBL	tr\|A0A068UL42\|A0A068UL42_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313\|EMBL:CDP08328.1}
TAIR10	AT1G78950.1	2E-175	Terpenoid cyclases family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	74682960	74693131	+
GWHAAZE00000007	mRNA	74682960	74693131	+
GWHAAZE00000007	exon	74682960	74683157	+
GWHAAZE00000007	exon	74686131	74686319	+
GWHAAZE00000007	exon	74686447	74686536	+
GWHAAZE00000007	exon	74686678	74686884	+
GWHAAZE00000007	exon	74687551	74687635	+
GWHAAZE00000007	exon	74687847	74688013	+
GWHAAZE00000007	exon	74688204	74688392	+
GWHAAZE00000007	exon	74688502	74688615	+
GWHAAZE00000007	exon	74688725	74688844	+
GWHAAZE00000007	exon	74689019	74689141	+
GWHAAZE00000007	exon	74690817	74690897	+
GWHAAZE00000007	exon	74691124	74691207	+
GWHAAZE00000007	exon	74693000	74693131	+
GWHAAZE00000007	CDS	74682960	74683157	+
GWHAAZE00000007	CDS	74686131	74686319	+
GWHAAZE00000007	CDS	74686447	74686536	+
GWHAAZE00000007	CDS	74686678	74686884	+
GWHAAZE00000007	CDS	74687551	74687635	+
GWHAAZE00000007	CDS	74687847	74688013	+
GWHAAZE00000007	CDS	74688204	74688392	+
GWHAAZE00000007	CDS	74688502	74688615	+
GWHAAZE00000007	CDS	74688725	74688844	+
GWHAAZE00000007	CDS	74689019	74689141	+
GWHAAZE00000007	CDS	74690817	74690897	+
GWHAAZE00000007	CDS	74691124	74691207	+
GWHAAZE00000007	CDS	74693000	74693131	+

Transcript Sequence
>GWHTAAZE026198 ATGTGGAAGTTGAAAGTTGGAGAAGGTAAAGGGCCGTGGTTGAGCAGTATTAACAATTTTGTGGGGAGGCAATTTTGGGAGTTTGAGGAAGATGAAGGGAGCCCAGAAGAGAGAGATATGGTTGAAAAGGCTAGACAATTTTACCATCAAAATCGATTTCTAGTTAAACCAAGCTCTGATCTTCTCATGCAAATGCAGCTCATCAAAGAAAGCCAGATTGATCTAACTAGCACTCCAATTGTGAGAGTGGGAAGCAGTGAAGAAGTAACTGATGAAATACTTCAAATGGTTCTAAGGAAAGCTGTTCGCTTAACTTCATCCATTCAAGCACATGATGGACACTGGCCTGCTGAAAATGCAGGCCCCTTGTTTTACACCCCTTTGCTTATCGTAGTTCTGTACCTTAGTGGAACAACGAATTCAGTTCTATCATCGGAACACAAAAAGGAGATTATTCGCCACATTTACAATCATCAGAACAAAGATGGGGGATGGGGATTTCATATAGAGGGGCATAGCATCATGCTTTCCACCGCATTTAATTATATTGCCTTGCGCTTACTGGGAGAAGGATCCAAAGAAGGAAGTGATGATCACGGGGAGGCTCTTGGGAAAGGCCGGAGATGGATACTTGATCATGGAAGCCTAACTACAATACCTTCTTGGGGAAAGATGGCTCTTTCGGCCATTGGTTTGTATGAGTGGACAGGTTGCAACCCGGTGCCCCCAGAACTTTTCCTTTCACCTTCTTATCTACCGTTTCATCCGGCAAAACTATGGTGCTATATTCGTGATACAAGCTTACCATTGTCATATTTGTATGGGAAGAAGTATGTTGGGCCGATCACTGATCTCATTTTATCACTTAGAGAAGAACTTTACACCCAACCTTATGAGAATATTGATTGGCCAAAAACTCGCTATATGGTTGCACAGGAGGATCTTTATGCTCCTCATTCCTTTATTCAAGATGTGATATGGGACGCACTTTATTACATTGGTGAGCCGCTTCTCAACCGTTGGCCCCTCTCTAAACTTAGAGAGAAAGCTCTACAAAAAGTAATGAATCACATTCACTACGAAGATGAGAATAGCAGATACTTAAATTTGGCATGTGTAGAGAAGTATTTCCATATGATGGCTTGTTGGGCAGAAGAGCCAAGTTCAAGTGCGTATAAGTGTCACCTTGCTAGAGTTCCCGATTACTTATGGGTTGCTGAAGACGGAATGAAAGTGCAGAGTTTGGGTTCTCAATTGTGGGATGCTGTTTTCACTACTCAAGCTATTATTGCAACTAATCTCGGAGAAGAATTTGGGACTACCCTAAAAAGGGCTCACAATTTTATTAAACAAACGCAGATTCGAGAAAACCCATCTGGTGACTTCCATAGCATGTATCGGTGCAACTCTATAGGAGGATGGCCTTTATCTGAACAAGATCAAGCTTGGCAAGTTTCTGACTGTACAGCTGAAGCATTGAAGAAATATACACCGCTTGAAGGAGATCGGTCCAATATAGTACAAACATCATGGGCTCTGATGGCTCTCATTCTCACCGGACAGGCTGAGAGAGATCCAGCACCTTTACATAAAGCAGCAAAGTTGATAATTAACTCCCAAACCGAAAAGGGTCAATTTCCGCAACAGGAGATTACGGGGGCCTCCATGGGGACCTTGAATCTGCATTATGCGTCATTCAAGTACGCATTTCCATTGTTGGCTCTTGCAGAATATCGTAAATGTGTCGTATTGCCCTCCCAAAACATCTCATCTAGCTAG

Network for GWHGAAZE026164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	99	366	1.20E-34
PF13243.7	SQHop_cyclase_C	491	580	6.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.170
	SRR3591707	mature leaf	0.023
	SRR3591708	Shoot apex	0.289
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.090
	SRR3591711	White flower	0.081
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.328
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.147
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.076
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.112
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.146
	SRR8316904	Silver flowering stage	0.138
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.053
	SRR8316907	Gold flowering stage	0.088
	SRR8316908	Gold flowering stage	0.130
SRP132670	SRR6706286	Control	0.037
	SRR6706287	Light intensity 50%	0.055
	SRR6706288	Light intensity 20%	0.023
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.065
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.132
	CNS0095596	Whole white alabastrum(diploid) 3	0.049
	CNS0095597	Whole white alabastrum(diploid) 4	0.206
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.042
	CNS0095600	Silvery flower (diploied) 3	0.010
	CNS0095601	Golden flower (diploid) 1	0.121
	CNS0095602	Golden flower (diploid) 2	0.104
	CNS0095603	Golden flower (diploid) 3	0.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.802
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.312
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.303
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.089
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.283
	CNS0095610	Silvery flower (tetraploid) 1	18.709
	CNS0095611	Silvery flower (tetraploid) 2	3.685
	CNS0095612	Silvery flower (tetraploid) 3	1.058
	CNS0095613	Golden flower (tetraploid) 1	34.196
	CNS0095614	Golden flower (tetraploid) 2	52.451
	CNS0095615	Golden flower (tetraploid) 3	13.960
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.006
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.185
	CRR073306	Third green 1	0.489
	CRR073307	Third green 2	0.335
	CRR073308	Third green 3	0.518
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.217
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.198
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000