Gene detail

Detail information of GWHGAAZE026087

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AGG91494.1	1.05551E-80	WRKY18 transcription factor [Vitis amurensis]
Swissprot	tr\|Q9SAH7\|WRK40_ARATH	5E-68	Probable WRKY transcription factor 40
trEMBL	tr\|M4NN45\|M4NN45_9ROSI	4E-81	WRKY18 transcription factor {ECO:0000313\|EMBL:AGG91494.1}
TAIR10	AT1G80840.1	2E-54	WRKY DNA-binding protein 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	73135273	73137489	+
GWHAAZE00000007	mRNA	73135273	73137489	+
GWHAAZE00000007	exon	73135273	73135611	+
GWHAAZE00000007	exon	73136525	73136641	+
GWHAAZE00000007	exon	73137145	73137489	+
GWHAAZE00000007	CDS	73135273	73135611	+
GWHAAZE00000007	CDS	73136525	73136641	+
GWHAAZE00000007	CDS	73137145	73137489	+

Transcript Sequence
>GWHTAAZE026121 ATGATGGAGGAGCTGAATAGGATGAACAAAAAGAACAAGAAGTTGACAGAAACCCTTGCCTCTGTGTGTGAAAATTACACTGCTCTAAGAAGCCACCTAGACAAGGTGATGCAGATGAAGAATGAAAGTGATCATGATCAACTTTCAAATTTGGGAAAAAGAAAATACGAGGAAGAAGAAGAAGGCTACATTAATACTTGTGGGAAGTCGTCTATTATTGGAAATAATAGGGGGTATAATTATGATCAGGGGCTTTCTTCACCTAATAAGAGACCAAAGGAAATCAGGACTAGTGTTTCCGGTGTTCGTGTACGTGTTGATCCATCTGATAAGAGCCTTGTAGTAAGGGATGGATACCAGTGGAGAAAGTATGGGCAAAAAGTGACTAGAGATAACCCTTCTCCTAGAGCCTACTTTAAGTGCTCTTTTGCCCCATCCTGCCCTGTCAAAAGGAAGGTACAAAGAAGTGTTGAAGATCCTAGTATTCTAATAGCCACATATGAAGGAGACCACAACCACAAGAAGCCTTCCCAAGCCGAATTGCCATTAGTGTTTAACCAAGGGGTGCACCCTGGCTTGAACCCCATGTCCTTATTAAGTCCTAGCACAAGTCTTGACTCCACTGAACCAGGACTGACCACCAACAAGAAAAGGTTCAACCCTGCAGGGCTTGAAATTGAAAAGTTTTTGGTTGAACAAATGGTTACTTCGCTCACTAGAAACCCCAATTTCACTTCAGCACTTGCAGCAATTATTTCCAACAAGATTCTGGACTATGATCTTATTAATGAAAAACAGTAA

Network for GWHGAAZE026087

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	117	174	9.50E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.218
	SRR3591706	second leaf	0.827
	SRR3591707	mature leaf	2.842
	SRR3591708	Shoot apex	0.090
	SRR3591709	Stem	6.468
	SRR3591710	White floral bud	1.695
	SRR3591711	White flower	28.148
	SRR3591712	Green floral bud	2.073
	SRR3591713	Yellow flower	31.861
SRP173429	SRR8316895	Juvenile bud stage	0.503
	SRR8316896	Juvenile bud stage	1.744
	SRR8316897	Juvenile bud stage	2.139
	SRR8316894	Third green stage	0.203
	SRR8316900	Third green stage	0.209
	SRR8316901	Third green stage	0.169
	SRR8316898	Complete white stage	0.054
	SRR8316899	Complete white stage	3.408
	SRR8316903	Complete white stage	0.064
	SRR8316902	Silver flowering stage	2.771
	SRR8316904	Silver flowering stage	2.297
	SRR8316905	Silver flowering stage	2.492
	SRR8316906	Gold flowering stage	5.360
	SRR8316907	Gold flowering stage	3.981
	SRR8316908	Gold flowering stage	4.421
SRP132670	SRR6706286	Control	7.591
	SRR6706287	Light intensity 50%	4.846
	SRR6706288	Light intensity 20%	2.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.301
	CNS0095593	Slightly white alabastrum(diploid) 2	14.883
	CNS0095594	Slightly white alabastrum(diploid) 3	14.430
	CNS0095595	Whole white alabastrum(diploid) 2	1.855
	CNS0095596	Whole white alabastrum(diploid) 3	0.348
	CNS0095597	Whole white alabastrum(diploid) 4	1.158
	CNS0095598	Silvery flower (diploied) 1	10.886
	CNS0095599	Silvery flower (diploied) 2	1.101
	CNS0095600	Silvery flower (diploied) 3	3.289
	CNS0095601	Golden flower (diploid) 1	39.299
	CNS0095602	Golden flower (diploid) 2	49.569
	CNS0095603	Golden flower (diploid) 3	46.674
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.361
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.736
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.439
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.066
	CNS0095610	Silvery flower (tetraploid) 1	4.727
	CNS0095611	Silvery flower (tetraploid) 2	1.237
	CNS0095612	Silvery flower (tetraploid) 3	1.300
	CNS0095613	Golden flower (tetraploid) 1	42.179
	CNS0095614	Golden flower (tetraploid) 2	5.277
	CNS0095615	Golden flower (tetraploid) 3	7.193
CRA001975	CRR073297	Stem 1	0.994
	CRR073298	Stem 2	1.089
	CRR073299	Stem 3	0.237
	CRR073300	Leaf 1	0.119
	CRR073301	Leaf 2	0.226
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.180
	CRR073306	Third green 1	1.329
	CRR073307	Third green 2	0.191
	CRR073308	Third green 3	1.659
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.099
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.679
	CRR073315	Gold flowering 1	2.696
	CRR073316	Gold flowering 2	7.509
	CRR073317	Gold flowering 3	4.542
	CRR073318	Tawny withering 1	0.726
	CRR073319	Tawny withering 2	3.281
	CRR073320	Tawny withering 3	0.176