Detail information of GWHGAAZE026077


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009789886.10PREDICTED: aspartate aminotransferase, chloroplastic [Nicotiana sylvestris]
COGYP_006285770.16E-127aspartate aminotransferase
Swissprottr|P46248|AAT5_ARATH0Aspartate aminotransferase, chloroplastic (Precursor)
trEMBLtr|M5XYB0|M5XYB0_PRUPE0Aspartate aminotransferase {ECO:0000256|RuleBase:RU000480}
TAIR10AT4G31990.20aspartate aminotransferase 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7289382672900272-
GWHAAZE00000007mRNA7289382672900272-
GWHAAZE00000007exon7289382672893957-
GWHAAZE00000007exon7289480872895072-
GWHAAZE00000007exon7289568772895853-
GWHAAZE00000007exon7289657972896722-
GWHAAZE00000007exon7289753772897646-
GWHAAZE00000007exon7289773172897839-
GWHAAZE00000007exon7289812172898210-
GWHAAZE00000007exon7289831172898349-
GWHAAZE00000007exon7289851772898711-
GWHAAZE00000007exon7289943372899660-
GWHAAZE00000007exon7289988672899963-
GWHAAZE00000007exon7290020172900272-
GWHAAZE00000007CDS7290020172900272-
GWHAAZE00000007CDS7289988672899963-
GWHAAZE00000007CDS7289943372899660-
GWHAAZE00000007CDS7289851772898711-
GWHAAZE00000007CDS7289831172898349-
GWHAAZE00000007CDS7289812172898210-
GWHAAZE00000007CDS7289773172897839-
GWHAAZE00000007CDS7289753772897646-
GWHAAZE00000007CDS7289657972896722-
GWHAAZE00000007CDS7289568772895853-
GWHAAZE00000007CDS7289480872895072-
GWHAAZE00000007CDS7289382672893957-
Transcript Sequence

Network for GWHGAAZE026077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00155.22Aminotran_1_21685342.70E-95
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00811ASP5 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Alanine, aspartate and glutamate metabolismmap00250
Cysteine and methionine metabolismmap00270
Arginine biosynthesismap00220
Arginine and proline metabolismmap00330
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0009058biological_processbiosynthetic process
GO:0003824molecular_functioncatalytic activity
GO:0008483molecular_functiontransaminase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf110.547
SRR3591706second leaf81.127
SRR3591707mature leaf75.175
SRR3591708Shoot apex77.849
SRR3591709Stem63.007
SRR3591710White floral bud103.809
SRR3591711White flower86.890
SRR3591712Green floral bud109.727
SRR3591713Yellow flower99.770
SRP173429 SRR8316895Juvenile bud stage 68.848
SRR8316896Juvenile bud stage 81.428
SRR8316897Juvenile bud stage 55.551
SRR8316894Third green stage 45.796
SRR8316900Third green stage 172.077
SRR8316901Third green stage 134.403
SRR8316898Complete white stage 76.929
SRR8316899Complete white stage 172.686
SRR8316903Complete white stage 103.400
SRR8316902Silver flowering stage65.459
SRR8316904Silver flowering stage91.932
SRR8316905Silver flowering stage48.516
SRR8316906Gold flowering stage 92.912
SRR8316907Gold flowering stage 89.745
SRR8316908Gold flowering stage 95.856
SRP132670SRR6706286Control71.027
SRR6706287Light intensity 50%79.263
SRR6706288Light intensity 20%90.642
CNP0000432CNS0095592Slightly white alabastrum(diploid) 173.546
CNS0095593Slightly white alabastrum(diploid) 269.816
CNS0095594Slightly white alabastrum(diploid) 353.439
CNS0095595Whole white alabastrum(diploid) 269.114
CNS0095596Whole white alabastrum(diploid) 381.217
CNS0095597Whole white alabastrum(diploid) 471.594
CNS0095598Silvery flower (diploied) 171.006
CNS0095599Silvery flower (diploied) 286.626
CNS0095600Silvery flower (diploied) 397.896
CNS0095601Golden flower (diploid) 164.835
CNS0095602Golden flower (diploid) 268.831
CNS0095603Golden flower (diploid) 371.302
CNS0095604Slightly white alabastrum(tetraploid) 169.447
CNS0095605Slightly white alabastrum(tetraploid) 260.505
CNS0095606Slightly white alabastrum(tetraploid) 399.718
CNS0095607Whole white alabastrum(tetraploid) 146.604
CNS0095608Whole white alabastrum(tetraploid) 261.213
CNS0095609Whole white alabastrum(tetraploid) 3121.538
CNS0095610Silvery flower (tetraploid) 178.377
CNS0095611Silvery flower (tetraploid) 284.278
CNS0095612Silvery flower (tetraploid) 382.404
CNS0095613Golden flower (tetraploid) 147.898
CNS0095614Golden flower (tetraploid) 259.215
CNS0095615Golden flower (tetraploid) 329.003
CRA001975CRR073297Stem 198.963
CRR073298Stem 282.169
CRR073299Stem 381.525
CRR073300Leaf 1106.845
CRR073301Leaf 289.651
CRR073302Leaf 3100.676
CRR073303Juvenile bud 1138.661
CRR073304Juvenile bud 2116.073
CRR073305Juvenile bud 3126.062
CRR073306Third green 176.277
CRR073307Third green 261.423
CRR073308Third green 362.082
CRR073309Second white 135.352
CRR073310Second white 242.322
CRR073311Second white 328.041
CRR073312Silver flowering 120.140
CRR073313Silver flowering 216.355
CRR073314Silver flowering 321.002
CRR073315Gold flowering 172.428
CRR073316Gold flowering 2126.055
CRR073317Gold flowering 345.527
CRR073318Tawny withering 158.865
CRR073319Tawny withering 255.765
CRR073320Tawny withering 365.182