Detail information of GWHGAAZE026052


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282775.20PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Vitis vinifera]
Swissprottr|Q9SSQ4|FRS6_ARATH0Protein FAR1-RELATED SEQUENCE 6
trEMBLtr|A0A067KEY6|A0A067KEY6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP33573.1}
TAIR10AT1G52520.10FAR1-related sequence 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7245420472456228-
GWHAAZE00000007mRNA7245420472456228-
GWHAAZE00000007exon7245420472456228-
GWHAAZE00000007CDS7245420472456228-
Transcript Sequence

Network for GWHGAAZE026052

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1591432.60E-23
PF10551.10MULE2733651.30E-24
PF04434.18SWIM5655890.00099
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.489
SRR3591706second leaf3.366
SRR3591707mature leaf5.130
SRR3591708Shoot apex6.807
SRR3591709Stem6.452
SRR3591710White floral bud5.348
SRR3591711White flower7.732
SRR3591712Green floral bud6.073
SRR3591713Yellow flower8.437
SRP173429 SRR8316895Juvenile bud stage 2.499
SRR8316896Juvenile bud stage 3.703
SRR8316897Juvenile bud stage 1.284
SRR8316894Third green stage 1.886
SRR8316900Third green stage 5.781
SRR8316901Third green stage 4.292
SRR8316898Complete white stage 2.523
SRR8316899Complete white stage 7.423
SRR8316903Complete white stage 4.040
SRR8316902Silver flowering stage2.948
SRR8316904Silver flowering stage4.271
SRR8316905Silver flowering stage2.010
SRR8316906Gold flowering stage 7.131
SRR8316907Gold flowering stage 4.684
SRR8316908Gold flowering stage 7.060
SRP132670SRR6706286Control4.468
SRR6706287Light intensity 50%4.017
SRR6706288Light intensity 20%4.235
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.571
CNS0095593Slightly white alabastrum(diploid) 23.276
CNS0095594Slightly white alabastrum(diploid) 32.830
CNS0095595Whole white alabastrum(diploid) 24.773
CNS0095596Whole white alabastrum(diploid) 33.747
CNS0095597Whole white alabastrum(diploid) 45.444
CNS0095598Silvery flower (diploied) 14.974
CNS0095599Silvery flower (diploied) 22.808
CNS0095600Silvery flower (diploied) 36.463
CNS0095601Golden flower (diploid) 12.974
CNS0095602Golden flower (diploid) 27.425
CNS0095603Golden flower (diploid) 35.657
CNS0095604Slightly white alabastrum(tetraploid) 14.381
CNS0095605Slightly white alabastrum(tetraploid) 23.867
CNS0095606Slightly white alabastrum(tetraploid) 35.702
CNS0095607Whole white alabastrum(tetraploid) 14.002
CNS0095608Whole white alabastrum(tetraploid) 24.260
CNS0095609Whole white alabastrum(tetraploid) 35.748
CNS0095610Silvery flower (tetraploid) 17.899
CNS0095611Silvery flower (tetraploid) 27.038
CNS0095612Silvery flower (tetraploid) 36.144
CNS0095613Golden flower (tetraploid) 14.914
CNS0095614Golden flower (tetraploid) 26.152
CNS0095615Golden flower (tetraploid) 36.952
CRA001975CRR073297Stem 15.177
CRR073298Stem 26.155
CRR073299Stem 36.433
CRR073300Leaf 17.454
CRR073301Leaf 25.252
CRR073302Leaf 35.403
CRR073303Juvenile bud 17.304
CRR073304Juvenile bud 26.076
CRR073305Juvenile bud 39.011
CRR073306Third green 11.706
CRR073307Third green 22.727
CRR073308Third green 32.182
CRR073309Second white 14.478
CRR073310Second white 23.307
CRR073311Second white 33.916
CRR073312Silver flowering 13.101
CRR073313Silver flowering 25.864
CRR073314Silver flowering 33.912
CRR073315Gold flowering 13.786
CRR073316Gold flowering 24.457
CRR073317Gold flowering 34.557
CRR073318Tawny withering 13.452
CRR073319Tawny withering 23.860
CRR073320Tawny withering 33.687