Detail information of GWHGAAZE026031


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081570.10PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X1 [Sesamum indicum]
COGYP_684642.14E-70ATP-dependent RNA helicase
Swissprottr|Q9LFN6|RH56_ARATH0DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|A0A061GJ96|A0A061GJ96_THECC0DEAD/DEAH box RNA helicase family protein isoform 2 {ECO:0000313|EMBL:EOY29498.1}
TAIR10AT5G11170.10DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7209420672103390-
GWHAAZE00000007mRNA7209420672103390-
GWHAAZE00000007exon7210327572103390-
GWHAAZE00000007exon7210068872100809-
GWHAAZE00000007exon7209990172100073-
GWHAAZE00000007exon7209952672099757-
GWHAAZE00000007exon7209929572099413-
GWHAAZE00000007exon7209873772098793-
GWHAAZE00000007exon7209730372097487-
GWHAAZE00000007exon7209573772095881-
GWHAAZE00000007exon7209530672095389-
GWHAAZE00000007exon7209515172095214-
GWHAAZE00000007exon7209420672094216-
GWHAAZE00000007CDS7210327572103390-
GWHAAZE00000007CDS7210068872100809-
GWHAAZE00000007CDS7209990172100073-
GWHAAZE00000007CDS7209952672099757-
GWHAAZE00000007CDS7209929572099413-
GWHAAZE00000007CDS7209873772098793-
GWHAAZE00000007CDS7209730372097487-
GWHAAZE00000007CDS7209573772095881-
GWHAAZE00000007CDS7209530672095389-
GWHAAZE00000007CDS7209515172095214-
GWHAAZE00000007CDS7209420672094216-
Transcript Sequence

Network for GWHGAAZE026031

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD802441.10E-36
PF00271.32Helicase_C2843912.10E-27
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12812DDX39B, UAP56, SUB2 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.280
SRR3591706second leaf21.744
SRR3591707mature leaf15.614
SRR3591708Shoot apex47.119
SRR3591709Stem26.620
SRR3591710White floral bud19.553
SRR3591711White flower21.835
SRR3591712Green floral bud14.488
SRR3591713Yellow flower14.147
SRP173429 SRR8316895Juvenile bud stage 22.499
SRR8316896Juvenile bud stage 24.738
SRR8316897Juvenile bud stage 14.279
SRR8316894Third green stage 9.740
SRR8316900Third green stage 22.487
SRR8316901Third green stage 18.860
SRR8316898Complete white stage 7.256
SRR8316899Complete white stage 27.223
SRR8316903Complete white stage 12.760
SRR8316902Silver flowering stage7.073
SRR8316904Silver flowering stage8.967
SRR8316905Silver flowering stage4.361
SRR8316906Gold flowering stage 16.264
SRR8316907Gold flowering stage 17.269
SRR8316908Gold flowering stage 21.534
SRP132670SRR6706286Control21.512
SRR6706287Light intensity 50%19.064
SRR6706288Light intensity 20%19.586
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.678
CNS0095593Slightly white alabastrum(diploid) 216.435
CNS0095594Slightly white alabastrum(diploid) 315.918
CNS0095595Whole white alabastrum(diploid) 213.610
CNS0095596Whole white alabastrum(diploid) 312.141
CNS0095597Whole white alabastrum(diploid) 411.690
CNS0095598Silvery flower (diploied) 138.554
CNS0095599Silvery flower (diploied) 232.776
CNS0095600Silvery flower (diploied) 321.156
CNS0095601Golden flower (diploid) 130.316
CNS0095602Golden flower (diploid) 227.742
CNS0095603Golden flower (diploid) 327.194
CNS0095604Slightly white alabastrum(tetraploid) 121.577
CNS0095605Slightly white alabastrum(tetraploid) 218.416
CNS0095606Slightly white alabastrum(tetraploid) 337.571
CNS0095607Whole white alabastrum(tetraploid) 112.843
CNS0095608Whole white alabastrum(tetraploid) 212.647
CNS0095609Whole white alabastrum(tetraploid) 320.381
CNS0095610Silvery flower (tetraploid) 126.395
CNS0095611Silvery flower (tetraploid) 231.539
CNS0095612Silvery flower (tetraploid) 336.088
CNS0095613Golden flower (tetraploid) 116.629
CNS0095614Golden flower (tetraploid) 220.550
CNS0095615Golden flower (tetraploid) 325.113
CRA001975CRR073297Stem 149.189
CRR073298Stem 248.826
CRR073299Stem 341.263
CRR073300Leaf 129.824
CRR073301Leaf 231.821
CRR073302Leaf 329.714
CRR073303Juvenile bud 124.351
CRR073304Juvenile bud 212.403
CRR073305Juvenile bud 326.384
CRR073306Third green 18.699
CRR073307Third green 25.893
CRR073308Third green 38.917
CRR073309Second white 17.953
CRR073310Second white 28.421
CRR073311Second white 35.360
CRR073312Silver flowering 16.933
CRR073313Silver flowering 28.658
CRR073314Silver flowering 36.903
CRR073315Gold flowering 133.177
CRR073316Gold flowering 252.191
CRR073317Gold flowering 335.435
CRR073318Tawny withering 136.709
CRR073319Tawny withering 227.848
CRR073320Tawny withering 332.382