Detail information of GWHGAAZE025975


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011081857.11.0569E-162PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Sesamum indicum]
trEMBLtr|A5C608|A5C608_VITVI2E-161Putative uncharacterized protein {ECO:0000313|EMBL:CAN68688.1}
TAIR10AT5G25560.17E-112CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene7112051671124310-
GWHAAZE00000007mRNA7112051671124310-
GWHAAZE00000007exon7112410571124310-
GWHAAZE00000007exon7112392671124013-
GWHAAZE00000007exon7112339571123487-
GWHAAZE00000007exon7112312271123199-
GWHAAZE00000007exon7112294871122991-
GWHAAZE00000007exon7112267671122716-
GWHAAZE00000007exon7112250971122591-
GWHAAZE00000007exon7112227371122364-
GWHAAZE00000007exon7112211471122183-
GWHAAZE00000007exon7112051671120665-
GWHAAZE00000007CDS7112410571124310-
GWHAAZE00000007CDS7112392671124013-
GWHAAZE00000007CDS7112339571123487-
GWHAAZE00000007CDS7112312271123199-
GWHAAZE00000007CDS7112294871122991-
GWHAAZE00000007CDS7112267671122716-
GWHAAZE00000007CDS7112250971122591-
GWHAAZE00000007CDS7112227371122364-
GWHAAZE00000007CDS7112211471122183-
GWHAAZE00000007CDS7112051671120665-
Transcript Sequence

Network for GWHGAAZE025975

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05495.13zf-CHY701512.50E-18
PF13639.7zf-RING_22052481.50E-08
PF14599.7zinc_ribbon_62533092.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10144RCHY1, PIRH2 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf133.080
SRR3591706second leaf22.028
SRR3591707mature leaf26.620
SRR3591708Shoot apex36.110
SRR3591709Stem134.052
SRR3591710White floral bud280.047
SRR3591711White flower476.079
SRR3591712Green floral bud83.114
SRR3591713Yellow flower1190.420
SRP173429 SRR8316895Juvenile bud stage 67.671
SRR8316896Juvenile bud stage 79.050
SRR8316897Juvenile bud stage 63.036
SRR8316894Third green stage 21.292
SRR8316900Third green stage 50.913
SRR8316901Third green stage 54.237
SRR8316898Complete white stage 97.407
SRR8316899Complete white stage 182.715
SRR8316903Complete white stage 196.927
SRR8316902Silver flowering stage232.180
SRR8316904Silver flowering stage369.577
SRR8316905Silver flowering stage199.597
SRR8316906Gold flowering stage 532.393
SRR8316907Gold flowering stage 380.506
SRR8316908Gold flowering stage 352.404
SRP132670SRR6706286Control26.500
SRR6706287Light intensity 50%30.686
SRR6706288Light intensity 20%30.089
CNP0000432CNS0095592Slightly white alabastrum(diploid) 175.276
CNS0095593Slightly white alabastrum(diploid) 262.399
CNS0095594Slightly white alabastrum(diploid) 357.681
CNS0095595Whole white alabastrum(diploid) 251.599
CNS0095596Whole white alabastrum(diploid) 329.721
CNS0095597Whole white alabastrum(diploid) 439.988
CNS0095598Silvery flower (diploied) 1194.408
CNS0095599Silvery flower (diploied) 2146.532
CNS0095600Silvery flower (diploied) 3386.919
CNS0095601Golden flower (diploid) 1176.953
CNS0095602Golden flower (diploid) 2369.305
CNS0095603Golden flower (diploid) 3346.514
CNS0095604Slightly white alabastrum(tetraploid) 134.369
CNS0095605Slightly white alabastrum(tetraploid) 222.519
CNS0095606Slightly white alabastrum(tetraploid) 336.505
CNS0095607Whole white alabastrum(tetraploid) 136.420
CNS0095608Whole white alabastrum(tetraploid) 228.810
CNS0095609Whole white alabastrum(tetraploid) 338.382
CNS0095610Silvery flower (tetraploid) 1330.393
CNS0095611Silvery flower (tetraploid) 2389.729
CNS0095612Silvery flower (tetraploid) 3240.238
CNS0095613Golden flower (tetraploid) 1374.653
CNS0095614Golden flower (tetraploid) 2385.284
CNS0095615Golden flower (tetraploid) 3721.136
CRA001975CRR073297Stem 148.424
CRR073298Stem 235.672
CRR073299Stem 314.962
CRR073300Leaf 150.438
CRR073301Leaf 244.330
CRR073302Leaf 314.734
CRR073303Juvenile bud 117.200
CRR073304Juvenile bud 26.025
CRR073305Juvenile bud 320.304
CRR073306Third green 16.002
CRR073307Third green 28.817
CRR073308Third green 35.454
CRR073309Second white 112.813
CRR073310Second white 213.749
CRR073311Second white 312.876
CRR073312Silver flowering 127.753
CRR073313Silver flowering 230.599
CRR073314Silver flowering 327.880
CRR073315Gold flowering 118.015
CRR073316Gold flowering 230.236
CRR073317Gold flowering 314.119
CRR073318Tawny withering 139.649
CRR073319Tawny withering 270.722
CRR073320Tawny withering 334.079