Gene detail

Detail information of GWHGAAZE025877

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006344555.1	0	PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Solanum tuberosum]
COG	YP_006407803.1	1E-53	pectin methylesterase
Swissprot	tr\|Q43062\|PME_PRUPE	0	Pectinesterase PPE8B (Precursor)
trEMBL	tr\|M1BB14\|M1BB14_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT3G43270.1	1E-169	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	69383057	69387663	-
GWHAAZE00000007	mRNA	69383057	69387663	-
GWHAAZE00000007	exon	69383057	69383763	-
GWHAAZE00000007	exon	69385411	69386070	-
GWHAAZE00000007	exon	69387402	69387663	-
GWHAAZE00000007	CDS	69387402	69387663	-
GWHAAZE00000007	CDS	69385411	69386070	-
GWHAAZE00000007	CDS	69383057	69383763	-

Transcript Sequence
>GWHTAAZE025911 ATGGTGGGTTTGTTGGGTGCTTGTGGGTCAGATGTGGTACAGTCGGTGTGCTTAAAGGTACCTGCTTCAGAGTTTGCGAATTCAGTTAAATCAACAATGGACACCGTCCGACAGGTGGTCTCCGTTGTTTCCAGATTTGCAAATGCCTTCGGAGAGTCTTCAAGGCTGTCCCGTGCCATTTCTGATTGCCTCGACTTGCTAGACCTCTCTGCTGATGAATTGGATTGGACCCTCGCTGCTGCTTCTCAAAACCCCAACAACGGCAATCTAAGTGCGGACATGAGAACATGGTTAAGCGGGGCATTGTTTAACCAAGACACATGCATGGATGGGTTTGATGGGACCAACAACAACATCGTCAAAAGTTTGATTGCTGGAGGACTCGACCAAATCACCTCTTTCGTTCGCCAAATTCTCTATATGGTTGACGACATTCCAAATCCCAATAAGCCAAAACCAACCAAAAATGGTCGTGGCGGTGGCGGTGGCGGTGGCCATAGCACTTCTACTCCCACCCCTAGATCAGGGGCTGCGGGGCGGGGCAGGAAATTGAGGAGCAACCGTGACCTATTTTATAGTAATAATAATAATGATGATGATGACAATTATCCATACTGGGTCAAACCTAAGGATCGAAGAGTACTACTCCTCCAAGCCCCGGGTGGGGTATTGGCAGATGTTATAGTAGCTGCAGATGGGAGCGGCAACTTCACCAAGGTTATGGATGCAATCTTAGCAGCCCCTGACCACAGCACGCGTCGCTATGTCATCTACGTGAAAAAGGGAGTTTACCAAGAGTACATTGACATAACTAAGAAGAAATGGAATCTCATGATGATCGGTGATGGCATTGGTGCCACTGTTATTACCGGCAATCGTAGTTTCATTGACGGATGGACTACTTATGCTTCTGCAACATTTGCCGTGAAAGGGCAAGGATTCATAGGGAGAGACATGACAATAGAGAACACGGCAGGACCACAAAAACACCAAGCAGTGGCATTCCGTTCAGACTCGGACCTATCGGTTTTATTTAGATGCTCTTTTACAGGTTACCAGGACACCCTCTACGCCCACTCCCTCCGCCAGTTTTACAGAGACTGCAAAATCACTGGCACCGTCGACTTCATTTTCGGCAATGGAGCTGTTGTCTTCCAGAACTGCCAGATACTAGCAAGGAAGGGCCTCCCTAACCAAAAGAACACCATCACCGCTCAGGGCCGTAAGGATTCATACCAAAATTCTGGCTTTTCTATCCAGTTCTCCAACATATCCGTTGAGCCCGATGTACTACTACCCAACTCCACATTGCCACAAATACAAACCTATCTTGGGCGACCGTGGAAGCTGTATTCGCGCACCGTAATCATGCAGTCTTATATAAGTAACGCCATTAGGCCCGAGGGGTGGCTAGAGTGGAATGGTAATTTCGCTTTGGACACTCTGTATTATGGGGAATACATGAACTATGGGCCCGGTGCCGGGTTGGGTAGTCGGGTCAAGTGGCCGGGCTTTCACGCCATAAATGACTCGGCCCAGGCGAATAACTTCACCGTTGCTCAGTTCATTTTAGGAAACTCGTGGTTGCCGTCCACTGGCGTCAAGTTCACTGCAGGATTGGGGGTTTGA

Network for GWHGAAZE025877

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	28	124	2.40E-14
PF01095.20	Pectinesterase	226	526	1.90E-145

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity
GO:0004857	molecular_function	enzyme inhibitor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.658
	SRR3591706	second leaf	9.979
	SRR3591707	mature leaf	8.439
	SRR3591708	Shoot apex	21.066
	SRR3591709	Stem	12.295
	SRR3591710	White floral bud	562.184
	SRR3591711	White flower	71.400
	SRR3591712	Green floral bud	193.654
	SRR3591713	Yellow flower	7.790
SRP173429	SRR8316895	Juvenile bud stage	37.258
	SRR8316896	Juvenile bud stage	59.919
	SRR8316897	Juvenile bud stage	33.102
	SRR8316894	Third green stage	25.174
	SRR8316900	Third green stage	146.399
	SRR8316901	Third green stage	162.065
	SRR8316898	Complete white stage	410.114
	SRR8316899	Complete white stage	298.553
	SRR8316903	Complete white stage	379.821
	SRR8316902	Silver flowering stage	68.534
	SRR8316904	Silver flowering stage	109.555
	SRR8316905	Silver flowering stage	54.754
	SRR8316906	Gold flowering stage	26.780
	SRR8316907	Gold flowering stage	46.403
	SRR8316908	Gold flowering stage	31.512
SRP132670	SRR6706286	Control	248.886
	SRR6706287	Light intensity 50%	269.482
	SRR6706288	Light intensity 20%	269.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.700
	CNS0095593	Slightly white alabastrum(diploid) 2	118.028
	CNS0095594	Slightly white alabastrum(diploid) 3	97.966
	CNS0095595	Whole white alabastrum(diploid) 2	103.002
	CNS0095596	Whole white alabastrum(diploid) 3	87.296
	CNS0095597	Whole white alabastrum(diploid) 4	129.882
	CNS0095598	Silvery flower (diploied) 1	50.920
	CNS0095599	Silvery flower (diploied) 2	50.845
	CNS0095600	Silvery flower (diploied) 3	75.307
	CNS0095601	Golden flower (diploid) 1	31.333
	CNS0095602	Golden flower (diploid) 2	27.571
	CNS0095603	Golden flower (diploid) 3	27.803
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.682
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.118
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.801
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	83.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	143.380
	CNS0095610	Silvery flower (tetraploid) 1	75.802
	CNS0095611	Silvery flower (tetraploid) 2	57.549
	CNS0095612	Silvery flower (tetraploid) 3	40.446
	CNS0095613	Golden flower (tetraploid) 1	5.488
	CNS0095614	Golden flower (tetraploid) 2	10.190
	CNS0095615	Golden flower (tetraploid) 3	4.402
CRA001975	CRR073297	Stem 1	59.955
	CRR073298	Stem 2	67.987
	CRR073299	Stem 3	60.796
	CRR073300	Leaf 1	193.503
	CRR073301	Leaf 2	179.678
	CRR073302	Leaf 3	169.257
	CRR073303	Juvenile bud 1	354.471
	CRR073304	Juvenile bud 2	732.306
	CRR073305	Juvenile bud 3	422.107
	CRR073306	Third green 1	967.086
	CRR073307	Third green 2	610.520
	CRR073308	Third green 3	677.015
	CRR073309	Second white 1	38.513
	CRR073310	Second white 2	8.296
	CRR073311	Second white 3	3.670
	CRR073312	Silver flowering 1	0.679
	CRR073313	Silver flowering 2	0.276
	CRR073314	Silver flowering 3	0.526
	CRR073315	Gold flowering 1	0.999
	CRR073316	Gold flowering 2	2.607
	CRR073317	Gold flowering 3	2.668
	CRR073318	Tawny withering 1	15.166
	CRR073319	Tawny withering 2	16.133
	CRR073320	Tawny withering 3	20.694