Gene detail

Detail information of GWHGAAZE025781

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009793978.1	0	PREDICTED: cytokinin dehydrogenase 3 [Nicotiana sylvestris]
COG	YP_001547531.1	5E-58	FAD linked oxidase domain-containing protein
Swissprot	tr\|Q9LTS3\|CKX3_ARATH	7E-129	Cytokinin dehydrogenase 3 (Precursor)
trEMBL	tr\|F8WLS1\|F8WLS1_PETHY	4E-178	Cytokinin oxidase {ECO:0000313\|EMBL:BAK52672.1}
TAIR10	AT5G56970.1	6E-107	cytokinin oxidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67709060	67712923	+
GWHAAZE00000007	mRNA	67709060	67712923	+
GWHAAZE00000007	exon	67709060	67709666	+
GWHAAZE00000007	exon	67710594	67710721	+
GWHAAZE00000007	exon	67711604	67711708	+
GWHAAZE00000007	exon	67712651	67712923	+
GWHAAZE00000007	CDS	67709060	67709666	+
GWHAAZE00000007	CDS	67710594	67710721	+
GWHAAZE00000007	CDS	67711604	67711708	+
GWHAAZE00000007	CDS	67712651	67712923	+

Transcript Sequence
>GWHTAAZE025815 ATGGCTAGGACTTGTTCAATTTCCTCATACTACATAGTGTCATTCTTCATAAGCCATTTTAAGTCCCTAATAGGGAAACTAATCCCATGGACTAATTCACTCCCTTATGAGATTCTCTCGCTTGATCTCTCAACTAGGCTTCATTTTGACCATGATGCAATTTCAAAAGCCTCTACTGATTTTGGCAAAATTTTACAAAAATATCCCTCGGCCGTTCTTTATCCCTCCTCCATTAACGACCTCGTAAATTTGATAAGATTCTCTTATAATTGTTCAGTCCCTTTTGGTATAGCTGCTAGAGGGCACGGCCACAGTGTGAGAGGGCAAGCTATGGCCCACAATGGGGTTGTGGTTGACATGTCATCATTGAAAAATGGGATTAGGGTTTCTTGGTGCAATGGATTAGGGTTTTATGCTGATGTTGGTGGGGAACAGCTTTGGATCGACGTGTTGAACGCCGCCCTTGATCATGGTCTCTCACCTGTCTCGTGGACCGACTACTTGTACCTTACCGTTGGTGGTACACTTTCTAATGCAGGGATTAGCGGCCAGTCGTTTTGCTGTGGTCCTCAGATTAGCAATGTCCATGAACTCGACGTTATTACTGGAAAAGGGGAATTTGTGACCTGCTCCAAACGGATGAACTCAGAGCTCTTTTATGCAGTACTTGGAGGTTTAGGACAATTTGGGATTATCACAAGAGCAAGAATTGTACTTGATAAAGCACCCACAAGGACAGATCAATCCAAAATAAATTCCCTGTTGGACAAACATGATATCATTTATTGCTTAGAAGCTGTCAAGTACTATGATGATCTCACCGTTGATACTGTCGATGCGGAATTGCAAGTATTGCTTCAAGGTCTGAATTATATCACTGGTTTTGAGTTCAAGAAAGATGTATTGTACCTGGACTTTCTCAATAGAGTTCGGACTGGAGAGTTAAAGCTTCAATCTAAGGGGCTATGGGATGTTCCTCATCCGTGGCTTAATCTCTTTGTGCCAAAATCTCGTATTATGGATTTTAATGCAGGTGTTTTCGTCGATATTATACGTAGGAAAAACCTGACCACGGGACCCGTCCTCGTGTACCCTATGACTCGAAAAACGTAA

Network for GWHGAAZE025781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	69	211	9.90E-19
PF09265.11	Cytokin-bind	246	369	1.30E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009690	biological_process	cytokinin metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding
GO:0003824	molecular_function	catalytic activity
GO:0019139	molecular_function	cytokinin dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.206
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.078
	SRR3591709	Stem	0.193
	SRR3591710	White floral bud	0.674
	SRR3591711	White flower	11.035
	SRR3591712	Green floral bud	0.726
	SRR3591713	Yellow flower	0.958
SRP173429	SRR8316895	Juvenile bud stage	0.209
	SRR8316896	Juvenile bud stage	0.030
	SRR8316897	Juvenile bud stage	0.051
	SRR8316894	Third green stage	1.744
	SRR8316900	Third green stage	0.649
	SRR8316901	Third green stage	0.577
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.585
	SRR8316903	Complete white stage	0.674
	SRR8316902	Silver flowering stage	0.045
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.045
SRP132670	SRR6706286	Control	1.979
	SRR6706287	Light intensity 50%	2.694
	SRR6706288	Light intensity 20%	2.944
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.415
	CNS0095593	Slightly white alabastrum(diploid) 2	2.764
	CNS0095594	Slightly white alabastrum(diploid) 3	3.163
	CNS0095595	Whole white alabastrum(diploid) 2	1.986
	CNS0095596	Whole white alabastrum(diploid) 3	0.062
	CNS0095597	Whole white alabastrum(diploid) 4	1.935
	CNS0095598	Silvery flower (diploied) 1	0.288
	CNS0095599	Silvery flower (diploied) 2	0.870
	CNS0095600	Silvery flower (diploied) 3	0.589
	CNS0095601	Golden flower (diploid) 1	0.751
	CNS0095602	Golden flower (diploid) 2	1.062
	CNS0095603	Golden flower (diploid) 3	0.504
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.031
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.163
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.066
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.154
	CNS0095610	Silvery flower (tetraploid) 1	0.888
	CNS0095611	Silvery flower (tetraploid) 2	0.554
	CNS0095612	Silvery flower (tetraploid) 3	0.477
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.149
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.502
	CRR073298	Stem 2	0.287
	CRR073299	Stem 3	0.072
	CRR073300	Leaf 1	0.208
	CRR073301	Leaf 2	0.285
	CRR073302	Leaf 3	0.049
	CRR073303	Juvenile bud 1	0.028
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.046
	CRR073308	Third green 3	0.228
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.079
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.314
	CRR073319	Tawny withering 2	1.189
	CRR073320	Tawny withering 3	0.000