Gene detail

Detail information of GWHGAAZE025750

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009629400.1	0	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 7-like [Nicotiana tomentosiformis]
COG	YP_004582080.1	3E-54	1-aminocyclopropane-1-carboxylate deaminase
Swissprot	tr\|Q9STR4\|1A17_ARATH	0	1-aminocyclopropane-1-carboxylate synthase 7
trEMBL	tr\|B9RKB7\|B9RKB7_RICCO	0	Acc synthase, putative {ECO:0000313\|EMBL:EEF48115.1}
TAIR10	AT4G26200.1	2E-152	1-amino-cyclopropane-1-carboxylate synthase 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	67194168	67196946	-
GWHAAZE00000007	mRNA	67194168	67196946	-
GWHAAZE00000007	exon	67194168	67194386	-
GWHAAZE00000007	exon	67194474	67195044	-
GWHAAZE00000007	exon	67195556	67195716	-
GWHAAZE00000007	exon	67195936	67196064	-
GWHAAZE00000007	exon	67196438	67196559	-
GWHAAZE00000007	exon	67196910	67196946	-
GWHAAZE00000007	CDS	67196910	67196946	-
GWHAAZE00000007	CDS	67196438	67196559	-
GWHAAZE00000007	CDS	67195936	67196064	-
GWHAAZE00000007	CDS	67195556	67195716	-
GWHAAZE00000007	CDS	67194474	67195044	-
GWHAAZE00000007	CDS	67194168	67194386	-

Transcript Sequence
>GWHTAAZE025784 ATGGAGAAGCTCTCTCTAAAAGATGACACAAGCCAACTTTCAGAAACACATGGAGAGGAATCTCCATATTTTGATGGATGGAAAGCATATGATGAAAATCCTTATCATGAATTAAACAACCCTTTGGGTGTTATTCAGATGGGATTGGCTGAAAATCAAGTTTCTTTTGATTTGGTGGAAGAGTACATGGAACAACACTCAAAAACTGTTAGCTGTGGGAGGAATGACTCAAACTTTAGGGAGAATGCTTTGTTTCAAGATTATCATGGGCTACTATCTTTTAGAAAGGGAATGGCAAGTTTCATGGAGGAAACAAGAGGGGGAAGAGCAAAATTCAAGGCAGAGAGAATAGTACTCACAGCAGGATCAACAGCTGCTAATGAACTATTAACCTTCATTTTAGCCAATCCTGGTGATTCCTTGCTAGTCCCTACTCCATACTATCCTGGATTTGACAGAGATTTAAGTTGGAGAACAGGAGTAAAAATCATACCGGTCCACTGCAACAGCTCAAACAATTTCAAAATCACTCCTCAAGCACTAGAATCAGCATACAACAAAGCGAAATCCATGAACATCAAAGTGAAAGGACTACTCATAACAAACCCCTCAAATCCACTAGGCATGACCATTTGTCGCGCAACCCTAGAAGAAATCCTTGACTTTGCCACGCGCAAAAATATTCACTTGATATCTGACGAGATCTATTCAGGCTCAACATTCTCATCTTCAGAGTTCGTCAGTATAGCAGAAGTACTCGAATCCCAAGACTATAAAGAAGCAGAGAGGGTCCACATAGTCTATAGCCTCTCAAAAGACTTAGGCCTTCCTGGTTTTAGGATTGGGACTATTTACTCATACAATGACAAAGTCGTCACAACCGCTAGGAAAATGTCTAGTTTCACCTTAATTTCTTCACAAACTCAACAATTTCTGGCCTCCATGTTGTCAGATAAAAGTTTCACTAAAAATTATGTAAGGATTAACCGTGAGAGGTTGAAGCAGAGGTACCAGATTATGGAGGCTACAAGAGAATATGAATCGGAGGTTTGGAGGTTAATTTTGGAAGAAGTTAAGTTGAATGTTTGTCCTGGTTCTTCTTGTCATTGTTGTGAGGTTGGGTGGTTTAGAGTTTGCTTTGCTAACATGAGTGAGCAAACACTTGCAGTTGCACTTGAAAGAATGCATGGTTTTATGAAGAGAAGGAATGTAAGGGCTGATTCATGTATGTTTAGTTAA

Network for GWHGAAZE025750

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	45	340	6.40E-74
PF00155.22	Aminotran_1_2	345	394	1.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01762	ACS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0030170	molecular_function	pyridoxal phosphate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.173
	SRR3591706	second leaf	0.180
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.718
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.159
	SRR3591712	Green floral bud	0.335
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.382
	SRR8316896	Juvenile bud stage	0.661
	SRR8316897	Juvenile bud stage	0.172
	SRR8316894	Third green stage	0.171
	SRR8316900	Third green stage	0.627
	SRR8316901	Third green stage	0.260
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.153
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.081
SRP132670	SRR6706286	Control	0.187
	SRR6706287	Light intensity 50%	0.201
	SRR6706288	Light intensity 20%	0.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.188
	CNS0095593	Slightly white alabastrum(diploid) 2	1.483
	CNS0095594	Slightly white alabastrum(diploid) 3	1.965
	CNS0095595	Whole white alabastrum(diploid) 2	0.079
	CNS0095596	Whole white alabastrum(diploid) 3	1.122
	CNS0095597	Whole white alabastrum(diploid) 4	0.327
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.181
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.146
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.683
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.773
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.088
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.160
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.402
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.180
	CRR073298	Stem 2	0.372
	CRR073299	Stem 3	0.124
	CRR073300	Leaf 1	0.492
	CRR073301	Leaf 2	0.509
	CRR073302	Leaf 3	0.094
	CRR073303	Juvenile bud 1	0.035
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.238
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.006
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000