Gene detail

Detail information of GWHGAAZE025654

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009597823.1	0	PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q66GI4\|PRRP1_ARATH	3E-145	Proteinaceous RNase P 1, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A061GLM0\|A0A061GLM0_THECC	0	Aceous RNase P 1, putative isoform 1 {ECO:0000313\|EMBL:EOY30750.1}
TAIR10	AT2G32230.1	2E-120	proteinaceous RNase P 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	65368768	65372135	-
GWHAAZE00000007	mRNA	65368768	65372135	-
GWHAAZE00000007	exon	65368768	65368896	-
GWHAAZE00000007	exon	65369011	65369079	-
GWHAAZE00000007	exon	65369672	65369792	-
GWHAAZE00000007	exon	65370232	65370410	-
GWHAAZE00000007	exon	65370665	65370754	-
GWHAAZE00000007	exon	65370843	65372135	-
GWHAAZE00000007	CDS	65370843	65372135	-
GWHAAZE00000007	CDS	65370665	65370754	-
GWHAAZE00000007	CDS	65370232	65370410	-
GWHAAZE00000007	CDS	65369672	65369792	-
GWHAAZE00000007	CDS	65369011	65369079	-
GWHAAZE00000007	CDS	65368768	65368896	-

Transcript Sequence
>GWHTAAZE025688 ATGAAGAAAGAATTTATTAAGGGTAAAAGTGATGAATTGGGAGACGTGAAGAAGGGAAGAAGGGCTAAGAAGAACAAATTAGATTTGCCTGAAGTTAAGATGAGGATTGGGTTGGATATGTGCTCGAAAAGAGGCGATGTTATAGGTGCGATTAAATTATATGATTTTGCTATGAGAGACGGCATAAGCATGGGGCAGTACAATTATGCTGTAATCTTGTACCTTTGTTCTTCTGCAGCTACCGGGGTTGTTCAACCAGCAAAAAGTGGGAGCAGTAATCGGAGTTCGAGTACCATGGACCAATCTAATGAGGGTTCTGAAGATTTGGGTGAGTTTGGGAAAATGGGTAAGAAGAATTTTGTGAGAAATGAATTGAATTCACAAGATTTGAATAATGGGCTACCGACTGAAAAAAAAGAGTCGAAGATTCTTACTTTTGATGGGAAACAAAATTCAAATGAATTCTCTAATGGATCTATAGATTCTCTTCCTCAAACATTAGATGAGTTGCTTCATTTGCTGCAGATTGGTCACTATAAAAAATATGTGAATGGTGATCGACAAGACAATGGAATTCAAGTAGGTGAAGATGTGAAGAAATATTCACTCCGGAGGGGGTTGGAAATATATGAGAAAATGCAATCGGAAAATGTCCCAATGAACGAAGCAACCTTGACATCAGTGGCTCGAATGGCAATGTCCATGGGTAATGGTGACATGGCATTTGATATGGTAAAGCAAATGAAACCGTTGGGGATAAACCCTAGATTAAGATCCTATGGTCCAGCTTTAACTGTTTTTTGTAATAATGGTGAAATCGATAAAGCATTTGCTGTAGAAGAACACATGCTCGATCATGGTGTCTATCCAGAGGAGCCCGAGTTAGAGGCACTCTTAAGAGTAAGTATAGAAGCTTGTAAAAGCGATAAGGTTTATTATTTGTTGCATAAACTCAGAACAAGAGTAAGGAAAGTCTCGGATTCTACTGGTGATTTGATTGAGAATTGGTTTAACACAAAGGTAGCTTCAAGAGTAGGGAAAAGAAAATGGGATGAAAAATTAGTAAAGAATGCAATTGAAAATGGAGGGGGTGGTTGGCACGGGCTTGGTTGGTTGGGTAAAGGAAAATGGACCGTATCTCGTACATTTGTTGACGCTAATGGTTTATGTAAATTTTGTGGTGAAAAATTGGTGACCATTGATCTTGATCCTATAGAAACAGAAAATTTTGCTGAATCGGTTGCCAGTATAGCTAGAAAAAGGGAGCGGCATTCGAGTTTTCAGGAATTTCAAAAATGGCTCGATTACTATGGACCATTTGAAGCAGTGGTGGATGCGGCGAATGTTGGGCTCTTTAGCCAAAGAAAATTCAAACCATCTATGGTCAATGCTGTTGTGAATGAGATTCACCAAAAGCTTCCTTCGAAGAAATGGCCACTTATTGTCTTGCATAATAGGCATATTTACGGAGTAAAAATGAATGAACCTACCAAGGCAGTGATCCAGAAGTGGAAAACTGCAGATGCACTCTATGCAACACCTACAGGGTCAAATGATGATTGGTACTGGCTGTATGCAGCTATTAAGTTTAAGTGCTTACTTGTGACCAATGATGAGATGAGAGACCATTTGTTTCAACTTTTAGGAGATGACTTCTTCCCTAAATGGAAAGAAAGGCATCAAGTGCGCTTCAATTTCTCTGAGGCTGGTCCAGTATTTCGCATGCCACCTCCATGTTCTGTTGTAATTCAGGAGTCAGAGAAAGGGCACTGGCATGTTCCAATCGAATCGAATCAGGATTCTGATGAAGAAAGAACTTGGTTATGCATTACACGAGCTAATTCACGTGTACCACCGCATGATTTTGCCACTACAAATGAA

Network for GWHGAAZE025654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17177.5	PPR_long	23	84	1.10E-14
PF17177.5	PPR_long	198	343	4.00E-53
PF16953.6	PRORP	384	609	2.20E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18213	PRORP	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.877
	SRR3591706	second leaf	13.460
	SRR3591707	mature leaf	10.084
	SRR3591708	Shoot apex	12.025
	SRR3591709	Stem	4.783
	SRR3591710	White floral bud	4.436
	SRR3591711	White flower	4.457
	SRR3591712	Green floral bud	5.132
	SRR3591713	Yellow flower	2.620
SRP173429	SRR8316895	Juvenile bud stage	6.499
	SRR8316896	Juvenile bud stage	5.971
	SRR8316897	Juvenile bud stage	2.930
	SRR8316894	Third green stage	2.906
	SRR8316900	Third green stage	7.031
	SRR8316901	Third green stage	6.061
	SRR8316898	Complete white stage	1.707
	SRR8316899	Complete white stage	6.035
	SRR8316903	Complete white stage	3.505
	SRR8316902	Silver flowering stage	2.359
	SRR8316904	Silver flowering stage	4.201
	SRR8316905	Silver flowering stage	1.711
	SRR8316906	Gold flowering stage	4.521
	SRR8316907	Gold flowering stage	4.727
	SRR8316908	Gold flowering stage	4.039
SRP132670	SRR6706286	Control	4.675
	SRR6706287	Light intensity 50%	5.267
	SRR6706288	Light intensity 20%	5.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.129
	CNS0095593	Slightly white alabastrum(diploid) 2	3.712
	CNS0095594	Slightly white alabastrum(diploid) 3	3.263
	CNS0095595	Whole white alabastrum(diploid) 2	3.401
	CNS0095596	Whole white alabastrum(diploid) 3	3.745
	CNS0095597	Whole white alabastrum(diploid) 4	2.697
	CNS0095598	Silvery flower (diploied) 1	8.124
	CNS0095599	Silvery flower (diploied) 2	5.658
	CNS0095600	Silvery flower (diploied) 3	5.847
	CNS0095601	Golden flower (diploid) 1	5.581
	CNS0095602	Golden flower (diploid) 2	6.403
	CNS0095603	Golden flower (diploid) 3	5.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.472
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.869
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.687
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.616
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.859
	CNS0095610	Silvery flower (tetraploid) 1	5.718
	CNS0095611	Silvery flower (tetraploid) 2	7.095
	CNS0095612	Silvery flower (tetraploid) 3	3.006
	CNS0095613	Golden flower (tetraploid) 1	1.880
	CNS0095614	Golden flower (tetraploid) 2	5.458
	CNS0095615	Golden flower (tetraploid) 3	2.900
CRA001975	CRR073297	Stem 1	5.500
	CRR073298	Stem 2	5.656
	CRR073299	Stem 3	3.073
	CRR073300	Leaf 1	3.885
	CRR073301	Leaf 2	2.879
	CRR073302	Leaf 3	2.818
	CRR073303	Juvenile bud 1	2.651
	CRR073304	Juvenile bud 2	1.609
	CRR073305	Juvenile bud 3	2.154
	CRR073306	Third green 1	0.228
	CRR073307	Third green 2	0.258
	CRR073308	Third green 3	0.445
	CRR073309	Second white 1	0.984
	CRR073310	Second white 2	0.833
	CRR073311	Second white 3	0.908
	CRR073312	Silver flowering 1	0.105
	CRR073313	Silver flowering 2	0.170
	CRR073314	Silver flowering 3	0.627
	CRR073315	Gold flowering 1	5.339
	CRR073316	Gold flowering 2	10.025
	CRR073317	Gold flowering 3	2.656
	CRR073318	Tawny withering 1	2.403
	CRR073319	Tawny withering 2	3.950
	CRR073320	Tawny withering 3	2.785