Detail information of GWHGAAZE025650


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW48918.16.78956E-84hypothetical protein EUGRSUZ_K02531 [Eucalyptus grandis]
COGYP_004916320.11E-21phosphoserine phosphatase
Swissprottr|O82796|SERC_ARATH1E-76Phosphoserine phosphatase, chloroplastic (Precursor)
trEMBLtr|A0A059A544|A0A059A544_EUCGR3E-84Uncharacterized protein {ECO:0000313|EMBL:KCW48918.1}
TAIR10AT1G18640.29E-563-phosphoserine phosphatase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6530313565305832+
GWHAAZE00000007mRNA6530313565305832+
GWHAAZE00000007exon6530313565303251+
GWHAAZE00000007exon6530432865304477+
GWHAAZE00000007exon6530456765304620+
GWHAAZE00000007exon6530570765305832+
GWHAAZE00000007CDS6530313565303251+
GWHAAZE00000007CDS6530432865304477+
GWHAAZE00000007CDS6530456765304620+
GWHAAZE00000007CDS6530570765305832+
Transcript Sequence

Network for GWHGAAZE025650

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00702.27Hydrolase91103.90E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01079serB, PSPH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf86.244
SRR3591706second leaf42.050
SRR3591707mature leaf26.275
SRR3591708Shoot apex75.254
SRR3591709Stem96.634
SRR3591710White floral bud40.262
SRR3591711White flower31.946
SRR3591712Green floral bud68.355
SRR3591713Yellow flower32.177
SRP173429 SRR8316895Juvenile bud stage 44.867
SRR8316896Juvenile bud stage 55.904
SRR8316897Juvenile bud stage 24.455
SRR8316894Third green stage 20.643
SRR8316900Third green stage 62.090
SRR8316901Third green stage 56.241
SRR8316898Complete white stage 21.282
SRR8316899Complete white stage 53.499
SRR8316903Complete white stage 31.498
SRR8316902Silver flowering stage17.631
SRR8316904Silver flowering stage19.469
SRR8316905Silver flowering stage10.976
SRR8316906Gold flowering stage 34.562
SRR8316907Gold flowering stage 28.712
SRR8316908Gold flowering stage 37.159
SRP132670SRR6706286Control32.070
SRR6706287Light intensity 50%29.915
SRR6706288Light intensity 20%36.113
CNP0000432CNS0095592Slightly white alabastrum(diploid) 175.795
CNS0095593Slightly white alabastrum(diploid) 272.615
CNS0095594Slightly white alabastrum(diploid) 371.477
CNS0095595Whole white alabastrum(diploid) 261.745
CNS0095596Whole white alabastrum(diploid) 365.185
CNS0095597Whole white alabastrum(diploid) 456.988
CNS0095598Silvery flower (diploied) 132.490
CNS0095599Silvery flower (diploied) 232.628
CNS0095600Silvery flower (diploied) 326.170
CNS0095601Golden flower (diploid) 129.970
CNS0095602Golden flower (diploid) 234.343
CNS0095603Golden flower (diploid) 330.111
CNS0095604Slightly white alabastrum(tetraploid) 168.789
CNS0095605Slightly white alabastrum(tetraploid) 272.339
CNS0095606Slightly white alabastrum(tetraploid) 368.075
CNS0095607Whole white alabastrum(tetraploid) 164.385
CNS0095608Whole white alabastrum(tetraploid) 262.615
CNS0095609Whole white alabastrum(tetraploid) 354.590
CNS0095610Silvery flower (tetraploid) 127.242
CNS0095611Silvery flower (tetraploid) 226.634
CNS0095612Silvery flower (tetraploid) 333.977
CNS0095613Golden flower (tetraploid) 122.635
CNS0095614Golden flower (tetraploid) 226.578
CNS0095615Golden flower (tetraploid) 322.092
CRA001975CRR073297Stem 153.170
CRR073298Stem 250.706
CRR073299Stem 342.082
CRR073300Leaf 154.273
CRR073301Leaf 247.775
CRR073302Leaf 351.633
CRR073303Juvenile bud 148.713
CRR073304Juvenile bud 250.631
CRR073305Juvenile bud 343.366
CRR073306Third green 130.747
CRR073307Third green 234.825
CRR073308Third green 329.697
CRR073309Second white 119.212
CRR073310Second white 223.015
CRR073311Second white 317.543
CRR073312Silver flowering 118.813
CRR073313Silver flowering 213.858
CRR073314Silver flowering 317.114
CRR073315Gold flowering 122.568
CRR073316Gold flowering 226.724
CRR073317Gold flowering 321.911
CRR073318Tawny withering 151.554
CRR073319Tawny withering 244.596
CRR073320Tawny withering 366.334