Detail information of GWHGAAZE025609


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010513410.19.23482E-11PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial isoform X2 [Camelina sativa]
Swissprottr|Q9LK08|HIBC7_ARATH2E-113-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial (Precursor)
trEMBLtr|M4CCL6|M4CCL6_BRARP0.000000002Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra001946.1-P}
TAIR10AT3G24360.20.000000002ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6436751064369173-
GWHAAZE00000007mRNA6436751064369173-
GWHAAZE00000007exon6436751064367529-
GWHAAZE00000007exon6436906864369173-
GWHAAZE00000007CDS6436906864369173-
GWHAAZE00000007CDS6436751064367529-
Transcript Sequence

Network for GWHGAAZE025609

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05605HIBCH Metabolic pathways map01100
Carbon metabolismmap01200
Propanoate metabolismmap00640
Valine, leucine and isoleucine degradationmap00280
beta-Alanine metabolismmap00410

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.122
SRR3591706second leaf2.686
SRR3591707mature leaf3.778
SRR3591708Shoot apex3.105
SRR3591709Stem6.168
SRR3591710White floral bud3.854
SRR3591711White flower2.828
SRR3591712Green floral bud6.505
SRR3591713Yellow flower2.790
SRP173429 SRR8316895Juvenile bud stage 4.529
SRR8316896Juvenile bud stage 5.735
SRR8316897Juvenile bud stage 2.766
SRR8316894Third green stage 4.153
SRR8316900Third green stage 5.532
SRR8316901Third green stage 7.169
SRR8316898Complete white stage 0.949
SRR8316899Complete white stage 3.824
SRR8316903Complete white stage 3.838
SRR8316902Silver flowering stage2.403
SRR8316904Silver flowering stage2.446
SRR8316905Silver flowering stage2.153
SRR8316906Gold flowering stage 5.072
SRR8316907Gold flowering stage 3.723
SRR8316908Gold flowering stage 2.955
SRP132670SRR6706286Control6.900
SRR6706287Light intensity 50%7.770
SRR6706288Light intensity 20%10.645
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.412
CNS0095593Slightly white alabastrum(diploid) 20.775
CNS0095594Slightly white alabastrum(diploid) 31.479
CNS0095595Whole white alabastrum(diploid) 20.660
CNS0095596Whole white alabastrum(diploid) 32.235
CNS0095597Whole white alabastrum(diploid) 40.574
CNS0095598Silvery flower (diploied) 14.957
CNS0095599Silvery flower (diploied) 22.858
CNS0095600Silvery flower (diploied) 33.693
CNS0095601Golden flower (diploid) 11.291
CNS0095602Golden flower (diploid) 22.313
CNS0095603Golden flower (diploid) 33.080
CNS0095604Slightly white alabastrum(tetraploid) 16.218
CNS0095605Slightly white alabastrum(tetraploid) 22.076
CNS0095606Slightly white alabastrum(tetraploid) 36.729
CNS0095607Whole white alabastrum(tetraploid) 13.521
CNS0095608Whole white alabastrum(tetraploid) 22.939
CNS0095609Whole white alabastrum(tetraploid) 37.593
CNS0095610Silvery flower (tetraploid) 13.305
CNS0095611Silvery flower (tetraploid) 24.329
CNS0095612Silvery flower (tetraploid) 32.404
CNS0095613Golden flower (tetraploid) 12.331
CNS0095614Golden flower (tetraploid) 23.270
CNS0095615Golden flower (tetraploid) 32.990
CRA001975CRR073297Stem 11.668
CRR073298Stem 21.034
CRR073299Stem 31.085
CRR073300Leaf 11.526
CRR073301Leaf 20.798
CRR073302Leaf 30.527
CRR073303Juvenile bud 13.659
CRR073304Juvenile bud 20.809
CRR073305Juvenile bud 31.164
CRR073306Third green 10.466
CRR073307Third green 20.134
CRR073308Third green 30.078
CRR073309Second white 10.304
CRR073310Second white 20.887
CRR073311Second white 30.078
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.379
CRR073314Silver flowering 30.331
CRR073315Gold flowering 11.565
CRR073316Gold flowering 21.259
CRR073317Gold flowering 30.561
CRR073318Tawny withering 11.218
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.848