Detail information of GWHGAAZE025592


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGC31683.10chloroplast acyl-acylcarrier protein thioesterase B [Lonicera japonica]
COGYP_004968926.12E-14acyl-ACP thioesterase
Swissprottr|Q9SQI3|FATB_GOSHI0Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBLtr|V5J5V6|V5J5V6_LONJA0Chloroplast acyl-acylcarrier protein thioesterase B {ECO:0000313|EMBL:AGC31683.1}
TAIR10AT1G08510.13E-143fatty acyl-ACP thioesterases B

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6400309564009582-
GWHAAZE00000007mRNA6400309564009582-
GWHAAZE00000007exon6400907664009582-
GWHAAZE00000007exon6400878064008913-
GWHAAZE00000007exon6400572164005834-
GWHAAZE00000007exon6400503264005203-
GWHAAZE00000007exon6400309564003367-
GWHAAZE00000007CDS6400907664009582-
GWHAAZE00000007CDS6400878064008913-
GWHAAZE00000007CDS6400572164005834-
GWHAAZE00000007CDS6400503264005203-
GWHAAZE00000007CDS6400309564003367-
Transcript Sequence

Network for GWHGAAZE025592

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12590.9Acyl-thio_N11283.80E-55
PF01643.18Acyl-ACP_TE1392882.20E-46
PF01643.18Acyl-ACP_TE3023811.60E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10781FATB Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061

Gene Ontology

GO term OntologyName
GO:0006633biological_processfatty acid biosynthetic process
GO:0016790molecular_functionthiolester hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf137.086
SRR3591706second leaf235.218
SRR3591707mature leaf138.731
SRR3591708Shoot apex91.774
SRR3591709Stem84.511
SRR3591710White floral bud285.060
SRR3591711White flower126.719
SRR3591712Green floral bud168.356
SRR3591713Yellow flower95.949
SRP173429 SRR8316895Juvenile bud stage 69.620
SRR8316896Juvenile bud stage 95.284
SRR8316897Juvenile bud stage 45.859
SRR8316894Third green stage 37.076
SRR8316900Third green stage 129.088
SRR8316901Third green stage 133.202
SRR8316898Complete white stage 88.974
SRR8316899Complete white stage 150.062
SRR8316903Complete white stage 159.268
SRR8316902Silver flowering stage74.830
SRR8316904Silver flowering stage118.606
SRR8316905Silver flowering stage58.853
SRR8316906Gold flowering stage 170.998
SRR8316907Gold flowering stage 136.261
SRR8316908Gold flowering stage 161.195
SRP132670SRR6706286Control145.746
SRR6706287Light intensity 50%156.505
SRR6706288Light intensity 20%153.691
CNP0000432CNS0095592Slightly white alabastrum(diploid) 175.215
CNS0095593Slightly white alabastrum(diploid) 287.304
CNS0095594Slightly white alabastrum(diploid) 373.580
CNS0095595Whole white alabastrum(diploid) 2114.664
CNS0095596Whole white alabastrum(diploid) 3109.263
CNS0095597Whole white alabastrum(diploid) 4132.699
CNS0095598Silvery flower (diploied) 175.199
CNS0095599Silvery flower (diploied) 290.560
CNS0095600Silvery flower (diploied) 3181.783
CNS0095601Golden flower (diploid) 173.581
CNS0095602Golden flower (diploid) 2138.295
CNS0095603Golden flower (diploid) 3133.907
CNS0095604Slightly white alabastrum(tetraploid) 1102.770
CNS0095605Slightly white alabastrum(tetraploid) 292.174
CNS0095606Slightly white alabastrum(tetraploid) 3114.094
CNS0095607Whole white alabastrum(tetraploid) 1147.451
CNS0095608Whole white alabastrum(tetraploid) 2184.028
CNS0095609Whole white alabastrum(tetraploid) 3156.722
CNS0095610Silvery flower (tetraploid) 1108.582
CNS0095611Silvery flower (tetraploid) 2113.809
CNS0095612Silvery flower (tetraploid) 3143.486
CNS0095613Golden flower (tetraploid) 169.625
CNS0095614Golden flower (tetraploid) 2111.400
CNS0095615Golden flower (tetraploid) 3113.708
CRA001975CRR073297Stem 1149.620
CRR073298Stem 2134.949
CRR073299Stem 3150.282
CRR073300Leaf 1220.410
CRR073301Leaf 2206.815
CRR073302Leaf 3196.444
CRR073303Juvenile bud 1225.898
CRR073304Juvenile bud 2263.843
CRR073305Juvenile bud 3257.467
CRR073306Third green 1328.391
CRR073307Third green 2325.295
CRR073308Third green 3305.532
CRR073309Second white 1155.304
CRR073310Second white 297.324
CRR073311Second white 394.561
CRR073312Silver flowering 1107.623
CRR073313Silver flowering 2133.802
CRR073314Silver flowering 3106.864
CRR073315Gold flowering 1162.341
CRR073316Gold flowering 2172.580
CRR073317Gold flowering 3184.596
CRR073318Tawny withering 1204.955
CRR073319Tawny withering 2157.747
CRR073320Tawny withering 3199.143