Gene detail

Detail information of GWHGAAZE025565

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010254329.1	0	PREDICTED: protein arginine N-methyltransferase PRMT10 [Nelumbo nucifera]
COG	YP_007057479.1	5E-29	50S ribosomal protein L11 methylase
Swissprot	tr\|Q9MAT5\|ANM10_ARATH	2E-167	Protein arginine N-methyltransferase PRMT10
trEMBL	tr\|D7TBX2\|D7TBX2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI28157.3}
TAIR10	AT1G04870.2	2E-134	protein arginine methyltransferase 10

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	63399269	63414942	+
GWHAAZE00000007	mRNA	63399269	63414942	+
GWHAAZE00000007	exon	63399269	63399470	+
GWHAAZE00000007	exon	63399898	63400003	+
GWHAAZE00000007	exon	63403578	63403767	+
GWHAAZE00000007	exon	63409472	63409657	+
GWHAAZE00000007	exon	63412069	63412152	+
GWHAAZE00000007	exon	63414766	63414942	+
GWHAAZE00000007	CDS	63399269	63399470	+
GWHAAZE00000007	CDS	63399898	63400003	+
GWHAAZE00000007	CDS	63403578	63403767	+
GWHAAZE00000007	CDS	63409472	63409657	+
GWHAAZE00000007	CDS	63412069	63412152	+
GWHAAZE00000007	CDS	63414766	63414942	+

Transcript Sequence
>GWHTAAZE025599 ATGGAGAAGACTGTGTTGGATGTAGGAACCGGAAGTGGCATTCTAGCTATATGGTCAGCACAAGCGGGTGCGAGGAAGGTATATGCAGTGGAAGCTACTAAGATGGCTGAACATGCCCGTGAACTCGTTAAAGCAAACAATCTCCAGGACGTTGTTGAAGTGATTGAGGGTTCAATTGAAGATATTACCCTGCCTGAGAAAGTTGATGTAATTATCTCAGAGTGGATGGGATATTTTCTTTTGCGGGAATCTATGTTTGATTCTGTGATTTGTGCACGTGACCGCTGGTTGAAACCAACTGGAGTTATGTATCCAAGTCGTGCTCGCATGTGGTTAGCACCTATCAGATCTGGATTAGGAGATAAAAAAATGAATGATTATGAAGGATCTATGGACGATTGGCGTTATTTCCTAAATGAGACTAAAAATTATTATGGGGTTGATATGAGCTGTCTAACAAAGCCTTACTCTGAGGAACAGAAAAAATACTACTTACGGACATCCCTTTGGAACAACCTTCATCCGAATCAAGTTATAGGAACCGCGGCCATGATAAAGGAGATGGATTGTTTAACAGTAACTGTAGAAGAAATCCTTAGCGTTGAAGCAAGCATTTCATCAACAATTACTGGAGATGACACAAGGCTATGCGGCTTTGCTGGGTGGTTTGATGTCCATTTTCAAGGAAACAAGGAGAGTCCAGCAGAAGAAGAGGTCGAGTTGACAACTGCCCCTAGCCAAGATCACACCACGCATTGGGGTCAACAGGTATTTCTCTTGCATCCTCCCAGTCGCGTCCAACAAGGTGACATTGTGAACATCGATTTCTCAATGATCCGTTCGAAAGAAAACCACCGGTTGATGGAGGTTGAGCTTGGTTGTGAGATTGCCCCCTCTTCTAGCAAGCCACTAGCGCCCTTCAAAAGCAAGTACTACATAGAATGA

Network for GWHGAAZE025565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06325.14	PrmA	2	74	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11434	PRMT1	FoxO signaling pathway	map04068
K11434	PRMT1	Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006479	biological_process	protein methylation
GO:0008168	molecular_function	methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.414
	SRR3591706	second leaf	25.260
	SRR3591707	mature leaf	13.617
	SRR3591708	Shoot apex	59.243
	SRR3591709	Stem	24.686
	SRR3591710	White floral bud	28.145
	SRR3591711	White flower	31.500
	SRR3591712	Green floral bud	46.177
	SRR3591713	Yellow flower	31.795
SRP173429	SRR8316895	Juvenile bud stage	33.966
	SRR8316896	Juvenile bud stage	51.204
	SRR8316897	Juvenile bud stage	21.136
	SRR8316894	Third green stage	19.849
	SRR8316900	Third green stage	58.945
	SRR8316901	Third green stage	54.104
	SRR8316898	Complete white stage	13.795
	SRR8316899	Complete white stage	57.102
	SRR8316903	Complete white stage	21.556
	SRR8316902	Silver flowering stage	17.431
	SRR8316904	Silver flowering stage	23.868
	SRR8316905	Silver flowering stage	12.118
	SRR8316906	Gold flowering stage	44.271
	SRR8316907	Gold flowering stage	42.873
	SRR8316908	Gold flowering stage	52.737
SRP132670	SRR6706286	Control	49.086
	SRR6706287	Light intensity 50%	50.865
	SRR6706288	Light intensity 20%	55.193
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.288
	CNS0095593	Slightly white alabastrum(diploid) 2	43.768
	CNS0095594	Slightly white alabastrum(diploid) 3	41.196
	CNS0095595	Whole white alabastrum(diploid) 2	45.393
	CNS0095596	Whole white alabastrum(diploid) 3	55.183
	CNS0095597	Whole white alabastrum(diploid) 4	44.671
	CNS0095598	Silvery flower (diploied) 1	26.605
	CNS0095599	Silvery flower (diploied) 2	26.704
	CNS0095600	Silvery flower (diploied) 3	29.303
	CNS0095601	Golden flower (diploid) 1	23.519
	CNS0095602	Golden flower (diploid) 2	27.527
	CNS0095603	Golden flower (diploid) 3	29.327
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.885
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.106
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.954
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	41.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.675
	CNS0095610	Silvery flower (tetraploid) 1	25.263
	CNS0095611	Silvery flower (tetraploid) 2	29.256
	CNS0095612	Silvery flower (tetraploid) 3	22.254
	CNS0095613	Golden flower (tetraploid) 1	19.752
	CNS0095614	Golden flower (tetraploid) 2	27.338
	CNS0095615	Golden flower (tetraploid) 3	26.060
CRA001975	CRR073297	Stem 1	44.795
	CRR073298	Stem 2	44.711
	CRR073299	Stem 3	39.630
	CRR073300	Leaf 1	51.313
	CRR073301	Leaf 2	43.811
	CRR073302	Leaf 3	45.764
	CRR073303	Juvenile bud 1	44.111
	CRR073304	Juvenile bud 2	35.165
	CRR073305	Juvenile bud 3	38.768
	CRR073306	Third green 1	14.390
	CRR073307	Third green 2	14.759
	CRR073308	Third green 3	15.875
	CRR073309	Second white 1	19.092
	CRR073310	Second white 2	25.163
	CRR073311	Second white 3	20.883
	CRR073312	Silver flowering 1	22.164
	CRR073313	Silver flowering 2	20.284
	CRR073314	Silver flowering 3	20.933
	CRR073315	Gold flowering 1	15.791
	CRR073316	Gold flowering 2	17.009
	CRR073317	Gold flowering 3	15.112
	CRR073318	Tawny withering 1	36.713
	CRR073319	Tawny withering 2	29.156
	CRR073320	Tawny withering 3	38.995