Gene detail

Detail information of GWHGAAZE025525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAA49162.1	0	beta-fructofuranosidase [Daucus carota]
COG	YP_004640399.1	2E-38	sucrose-6-phosphate hydrolase
Swissprot	tr\|P26792\|INV1_DAUCA	0	Beta-fructofuranosidase, insoluble isoenzyme 1 (Precursor)
trEMBL	tr\|A0A022R9E5\|A0A022R9E5_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35515.1}
TAIR10	AT3G52600.2	5E-157	cell wall invertase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	62546511	62558791	-
GWHAAZE00000007	mRNA	62546511	62558791	-
GWHAAZE00000007	exon	62557931	62558791	-
GWHAAZE00000007	exon	62557051	62557209	-
GWHAAZE00000007	exon	62547755	62548002	-
GWHAAZE00000007	exon	62547564	62547654	-
GWHAAZE00000007	exon	62546511	62546561	-
GWHAAZE00000007	CDS	62557931	62558791	-
GWHAAZE00000007	CDS	62557051	62557209	-
GWHAAZE00000007	CDS	62547755	62548002	-
GWHAAZE00000007	CDS	62547564	62547654	-
GWHAAZE00000007	CDS	62546511	62546561	-

Transcript Sequence
>GWHTAAZE025559 ATGTATTATAAGGGAATTTACCACTTATTCTACCAATACAATCCTAAAAGTGTTGAGGACGCAAATATTGAGTGGGCTCATTCCGTGTCAACAGACATGGTCAATTGGAAACAATTAAATCCAGCAATTTACCCTTCAAAGCGTTTTGATAAATTCGGATGTTGGTCCGGATCGGCTACTATCCGCCCGGGTGGAAAACCCATCATCCTCTACACTGGAGTTGTTGACCCATTACCATATCCGGGCATTCAAGTACAAAACTATGCGGTCCCCGCCAACTATTCGGATCCCTACCTCCAAAAATGGGTCAAACCCGATAATAACCCAATAGTCACTGCCACGAAAGGCGAGAACTCAACCGCATTTCGTGACCCGACAACCGCTTGGTTAATAAATGGGCATTGGAATATTCTAGTTGGCGGTGGGGAGAACAATCGAGGCATTGCATATTTGTATAAAAGTAAAAATTTTATGAGATGGGCTAAAGCCAAACACCCGTTATATTCGCGGGCGAACACTGGAACATGGGAATGCCCGGATTTTTACCCGGTCTCCCTAATGGGTACAAACGGGTTGGATACTTCTGTGGTAGGGGAAAATGTGAAGCATGTGTTGAAGGTGAGTCTTGATGCTACTAGGAATGATTACTACACAATTGGACAATATTTGCCTGATAAAGATCGATACGTGCCAAATGATGGGTCAATTTATGGTTGGGGCGGGTTAAGATATGATTATGGAAATTTTTATGCATCCAAGACATTCTTTGACGCGAGTAAGAAACGAAGGATTTTGTGGGGTTGGTCTAATGAATCCGATTCTCATAAAGAGGATGTTGTGAAAGGATGGGCAGGAGTTCAGACCATACCACGTTCCGTTTGGCTGGATCCGAATGGAAAACAATTGCTACAGTGGCCAATCCAAGAATTAGAAACTTTAAGGGGGCAAAACGTCAAATTCAGCAATAAAATACTGCATAAAGGAGATCGTATAGAAATTAAAGGAATAGCAGCCGCGCAGGCAGATGTTGATGTAACTTTCTCATTCCCAAGTTTGGACAAAGCTGAGCCATCAGATCCCAATTGGGTGGGTTTTGATGGGCAAGATGTATGTAACAAAAAGGGTTCAAATGTTGTTGGCGGAGTTGGGCCATTCGGGTTCTTGACATTGGCTTCGAAAAACCTAGAAGAATATACTGCTATTTTCTTTAGAGTTTTCAAGAAAAATGACGGGAAATTTAAAGTTTTATTGTGCTCTGATTCAACCAGATCCTCTTTGGATAAAAGAGTGTACAAACCATCTTTTGCAAGCTTTATGGATGTGGATCTTGCATATAAGAGGCTTTCTCTTAGAAGTTTGATCGATCATTCTGTTATAGAAAGTTTTGGAGTTGGAGGAAAATATGCATAA

Network for GWHGAAZE025525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.21	Glyco_hydro_32N	1	306	2.10E-88
PF08244.13	Glyco_hydro_32C	309	468	1.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.086
	SRR3591707	mature leaf	0.197
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	8.152
	SRR3591711	White flower	36.121
	SRR3591712	Green floral bud	0.670
	SRR3591713	Yellow flower	22.665
SRP173429	SRR8316895	Juvenile bud stage	0.062
	SRR8316896	Juvenile bud stage	0.033
	SRR8316897	Juvenile bud stage	0.029
	SRR8316894	Third green stage	0.492
	SRR8316900	Third green stage	6.371
	SRR8316901	Third green stage	5.305
	SRR8316898	Complete white stage	13.640
	SRR8316899	Complete white stage	32.972
	SRR8316903	Complete white stage	27.341
	SRR8316902	Silver flowering stage	53.878
	SRR8316904	Silver flowering stage	70.449
	SRR8316905	Silver flowering stage	34.126
	SRR8316906	Gold flowering stage	117.679
	SRR8316907	Gold flowering stage	145.096
	SRR8316908	Gold flowering stage	143.055
SRP132670	SRR6706286	Control	9.753
	SRR6706287	Light intensity 50%	8.333
	SRR6706288	Light intensity 20%	8.892
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.244
	CNS0095593	Slightly white alabastrum(diploid) 2	0.093
	CNS0095594	Slightly white alabastrum(diploid) 3	0.037
	CNS0095595	Whole white alabastrum(diploid) 2	0.354
	CNS0095596	Whole white alabastrum(diploid) 3	0.022
	CNS0095597	Whole white alabastrum(diploid) 4	0.026
	CNS0095598	Silvery flower (diploied) 1	2.691
	CNS0095599	Silvery flower (diploied) 2	4.242
	CNS0095600	Silvery flower (diploied) 3	73.231
	CNS0095601	Golden flower (diploid) 1	3.977
	CNS0095602	Golden flower (diploid) 2	53.006
	CNS0095603	Golden flower (diploid) 3	58.255
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.857
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.177
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.304
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.037
	CNS0095610	Silvery flower (tetraploid) 1	113.676
	CNS0095611	Silvery flower (tetraploid) 2	50.997
	CNS0095612	Silvery flower (tetraploid) 3	48.768
	CNS0095613	Golden flower (tetraploid) 1	23.203
	CNS0095614	Golden flower (tetraploid) 2	54.190
	CNS0095615	Golden flower (tetraploid) 3	21.464
CRA001975	CRR073297	Stem 1	0.276
	CRR073298	Stem 2	0.287
	CRR073299	Stem 3	0.015
	CRR073300	Leaf 1	3.085
	CRR073301	Leaf 2	4.182
	CRR073302	Leaf 3	3.805
	CRR073303	Juvenile bud 1	1.394
	CRR073304	Juvenile bud 2	2.640
	CRR073305	Juvenile bud 3	6.427
	CRR073306	Third green 1	54.673
	CRR073307	Third green 2	80.329
	CRR073308	Third green 3	64.374
	CRR073309	Second white 1	49.145
	CRR073310	Second white 2	36.161
	CRR073311	Second white 3	37.450
	CRR073312	Silver flowering 1	24.870
	CRR073313	Silver flowering 2	19.140
	CRR073314	Silver flowering 3	27.589
	CRR073315	Gold flowering 1	0.767
	CRR073316	Gold flowering 2	0.536
	CRR073317	Gold flowering 3	0.022
	CRR073318	Tawny withering 1	1.780
	CRR073319	Tawny withering 2	3.323
	CRR073320	Tawny withering 3	0.502