Gene detail

Detail information of GWHGAAZE025411

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009614880.1	0	PREDICTED: triacylglycerol lipase 2-like [Nicotiana tomentosiformis]
COG	YP_004179059.1	6E-14	alpha/beta hydrolase fold protein
Swissprot	tr\|Q67ZU1\|LIP2_ARATH	6E-154	Triacylglycerol lipase 2 (Precursor)
trEMBL	tr\|A0A068V7G9\|A0A068V7G9_COFCA	0	Lipase {ECO:0000256\|PIRNR:PIRNR000862}
TAIR10	AT5G14180.1	9E-122	Myzus persicae-induced lipase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60842526	60850948	-
GWHAAZE00000007	mRNA	60842526	60850948	-
GWHAAZE00000007	exon	60850745	60850948	-
GWHAAZE00000007	exon	60850399	60850512	-
GWHAAZE00000007	exon	60844786	60844926	-
GWHAAZE00000007	exon	60844307	60844417	-
GWHAAZE00000007	exon	60843981	60844124	-
GWHAAZE00000007	exon	60843636	60843676	-
GWHAAZE00000007	exon	60843182	60843261	-
GWHAAZE00000007	exon	60842526	60842845	-
GWHAAZE00000007	CDS	60850745	60850948	-
GWHAAZE00000007	CDS	60850399	60850512	-
GWHAAZE00000007	CDS	60844786	60844926	-
GWHAAZE00000007	CDS	60844307	60844417	-
GWHAAZE00000007	CDS	60843981	60844124	-
GWHAAZE00000007	CDS	60843636	60843676	-
GWHAAZE00000007	CDS	60843182	60843261	-
GWHAAZE00000007	CDS	60842526	60842845	-

Transcript Sequence
>GWHTAAZE025445 ATGGGCCTTTACAACTACAATCACTTGTTCAATTTGGTCATGTTGAGCTTATGTGCCCTGTTCTTGATCACTCAGCCTTATCAAGCATTGGGTTCAAGCCGCGGTCCGGTGGGCCCTACCAGCATTGCCATCTCGGTTGGGCCACCGCCGGGTATATGTGCGGCTGCTGCGTCAATCCACGGTTACAAGTGCCAAGAGTTTGATGTAAGGACTGATGATGGGTACATATTGAGCGTTCAAAGAATTCCAGAGGGTCGTAGAGGAGGAGGTGGTGGCCCTAACAAGCAGCCTGTCTTATTGCAACATGGTGTTCTTGTGGATGGGATGACATGGCTAGTGAATTCTCCGGACCAATCTCTGGCGTTTATGTTGGCTGATAGCGGTTTTGATGTGTGGATTGCTAACACTAGAGGCACCAGATTTAGCAGACGGCACGTGTCTCTTGATCCTAGCAACCCTGAATTCTGGAACTGGACATGGGACGATTTGGTGACACACGACCTACCAGCTACAATTGAATTTGTATTCAGACAAACTGGCCAAAAGACCCATTATGTTGGCCATTCTTTGGGAACACTGATAGCATTGGCATCATTCTCAGAGGGGAAACAAGTAGACAAGGTCAGATCAGCAGTTTTACTTAGCCCCATTGCATACTTGAGCCACATGACCACTGCCCTTGGCGTTGTTGCTGCCAGAGCCTTTGTTGGCGAGATGACTACACTGTTTGGTCTTGCAGAATTCAATCCAAAGGGCGAGCCAGTAGCCAATTTACTCAAGGCGTTGTGTGCTGACCCAGGGGTTGACTGCTATGACTTACTAAGTGCACTTACAGCTGTTCGAGACGGAATACTTGCGAAATACGACTACGGGAATTCGGACTTCAACGTGGAGCATTACGGTGAATCTAAGCCGCCTCACTATAACCTCGCTCTTATCCCCAAAGACCTTCCTCTATTCCTCAGCTACGGAGGCCAAGACGCACTCTCTGACGTTAGAGATGTCGAGACGTTACTCGACAGTCTAAAGTTACACGACGCAGACAAGTTGAGCGTTCAGTACATTAAGGACTATGCTCATGCCGATTTCATAATGGGTGTTACGGCTAAAGATATCGTGTATAATCAGATTCTTACATTCTTCAAAAGCCACTAG

Network for GWHGAAZE025411

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04083.17	Abhydro_lipase	57	114	3.20E-17
PF00756.21	Esterase	154	221	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01052	LIPA	Steroid biosynthesis	map00100
		Lysosome	map04142
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.605
	SRR3591706	second leaf	7.267
	SRR3591707	mature leaf	1.859
	SRR3591708	Shoot apex	24.586
	SRR3591709	Stem	11.316
	SRR3591710	White floral bud	14.312
	SRR3591711	White flower	3.621
	SRR3591712	Green floral bud	12.756
	SRR3591713	Yellow flower	1.008
SRP173429	SRR8316895	Juvenile bud stage	6.519
	SRR8316896	Juvenile bud stage	6.977
	SRR8316897	Juvenile bud stage	5.360
	SRR8316894	Third green stage	1.259
	SRR8316900	Third green stage	2.501
	SRR8316901	Third green stage	2.435
	SRR8316898	Complete white stage	0.403
	SRR8316899	Complete white stage	5.515
	SRR8316903	Complete white stage	0.833
	SRR8316902	Silver flowering stage	0.182
	SRR8316904	Silver flowering stage	0.966
	SRR8316905	Silver flowering stage	0.158
	SRR8316906	Gold flowering stage	0.245
	SRR8316907	Gold flowering stage	0.188
	SRR8316908	Gold flowering stage	0.384
SRP132670	SRR6706286	Control	8.817
	SRR6706287	Light intensity 50%	6.674
	SRR6706288	Light intensity 20%	6.774
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.917
	CNS0095593	Slightly white alabastrum(diploid) 2	4.815
	CNS0095594	Slightly white alabastrum(diploid) 3	5.328
	CNS0095595	Whole white alabastrum(diploid) 2	7.775
	CNS0095596	Whole white alabastrum(diploid) 3	6.485
	CNS0095597	Whole white alabastrum(diploid) 4	10.793
	CNS0095598	Silvery flower (diploied) 1	13.957
	CNS0095599	Silvery flower (diploied) 2	11.332
	CNS0095600	Silvery flower (diploied) 3	2.708
	CNS0095601	Golden flower (diploid) 1	8.610
	CNS0095602	Golden flower (diploid) 2	6.172
	CNS0095603	Golden flower (diploid) 3	6.870
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.881
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.267
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.915
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.158
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.678
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.912
	CNS0095610	Silvery flower (tetraploid) 1	1.462
	CNS0095611	Silvery flower (tetraploid) 2	4.333
	CNS0095612	Silvery flower (tetraploid) 3	2.062
	CNS0095613	Golden flower (tetraploid) 1	0.479
	CNS0095614	Golden flower (tetraploid) 2	1.386
	CNS0095615	Golden flower (tetraploid) 3	1.483
CRA001975	CRR073297	Stem 1	24.297
	CRR073298	Stem 2	13.801
	CRR073299	Stem 3	16.996
	CRR073300	Leaf 1	4.463
	CRR073301	Leaf 2	6.710
	CRR073302	Leaf 3	2.153
	CRR073303	Juvenile bud 1	4.590
	CRR073304	Juvenile bud 2	2.056
	CRR073305	Juvenile bud 3	4.094
	CRR073306	Third green 1	1.867
	CRR073307	Third green 2	1.420
	CRR073308	Third green 3	2.647
	CRR073309	Second white 1	0.348
	CRR073310	Second white 2	0.134
	CRR073311	Second white 3	0.554
	CRR073312	Silver flowering 1	0.898
	CRR073313	Silver flowering 2	1.317
	CRR073314	Silver flowering 3	0.642
	CRR073315	Gold flowering 1	2.335
	CRR073316	Gold flowering 2	0.697
	CRR073317	Gold flowering 3	2.836
	CRR073318	Tawny withering 1	9.277
	CRR073319	Tawny withering 2	12.853
	CRR073320	Tawny withering 3	12.233