Gene detail

Detail information of GWHGAAZE025401

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097317.1	1.22E-135	PREDICTED: thymidylate kinase isoform X1 [Sesamum indicum]
COG	YP_006863213.1	9E-29	thymidylate kinase
trEMBL	tr\|D7UBG1\|D7UBG1_VITVI	2E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40076.3}
TAIR10	AT5G59440.1	2E-86	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60722790	60726488	+
GWHAAZE00000007	mRNA	60722790	60726488	+
GWHAAZE00000007	exon	60722790	60723142	+
GWHAAZE00000007	exon	60723388	60723499	+
GWHAAZE00000007	exon	60723578	60723637	+
GWHAAZE00000007	exon	60725374	60725478	+
GWHAAZE00000007	exon	60726167	60726488	+
GWHAAZE00000007	CDS	60722790	60723142	+
GWHAAZE00000007	CDS	60723388	60723499	+
GWHAAZE00000007	CDS	60723578	60723637	+
GWHAAZE00000007	CDS	60725374	60725478	+
GWHAAZE00000007	CDS	60726167	60726283	+
GWHAAZE00000007	three_prime_UTR	60726284	60726488	+

Transcript Sequence
>GWHTAAZE025435 TTGTTTCTCTATCTTTTTTGTAGTAATCTTGGGGCAGTATCTGTAAGGCGGTCGTTGAACACTAAATTACCAATCAAGTCCTCTTCTAGACAAATTCACATGGAAAATAATCACAGCAGTGACTCGAGAGGCGCTTTAATTGTTCTAGAAGGTTTGGATCGTAGTGGAAAGACCTCACAATCTAGTAGACTAGTCTCGTATGTGGAGGGCTTAGGGCATTCAGTTGAATCTTGGCGCTTTCCTGATAGAAATACAGGTGTTGGGCAAATGATTTCTTCATATCTTGGCAATAAATCACATTTGGATGATCACACAATTCATCTACTCTTTAGTGCAAATCGCTGGGAGAAGAGATCATTGATGGAGAATAAGCTTCAGACTGGAACCACTCTCATTGTTGATCGCTATTCATATTCTGGGGTGGCTTTCTCATCTGCCAAAGGGCTTGATATTGAATGGTGTAAGGCTCCGGAGAGGGGGTTGCTGGCTCCTGATCTGGTATTATACCTTGACATACCACCTGAGAAAGCTGCTGAAAGAGGAGGCTATGGAGGTGAGCGATATGAGCAGCTTGAGTTTCAAAGAAAAGTTGCCCAATCCTATCAGATGCTTCACGATGCCTCCTGGAAGATAATAGATGGTAGCCTTGCAGTGGAAGAAGTGGAGAAACAAGTGAGGGAGATCGTATCAGATTGTGTGATGACTTGCAAAAAAGGGAAGCCTGTCTCCCTTCTCTGGTCCTCTTAAAAACTATTTTGGCAGATAGACTATAGCGAGTATATGTATGTCAATTTCTCTCTATATAATATGATCTGTGTGAACTTGTAACTTCAATGTTGGTTTAGCATCTACATTGGTAGTCATTAAACATCAGTTAAGTTCGAAAACAAAACCCCTTTATTTCTTACTTTACATAAATCGTTTTTTTCTTTTCCATATATTTTTTGAATTA

Network for GWHGAAZE025401

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02223.18	Thymidylate_kin	49	225	5.80E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00943	tmk, DTYMK	Metabolic pathways	map01100
K00943	tmk, DTYMK	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006233	biological_process	dTDP biosynthetic process
GO:0004798	molecular_function	thymidylate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.289
	SRR3591706	second leaf	14.163
	SRR3591707	mature leaf	15.935
	SRR3591708	Shoot apex	29.094
	SRR3591709	Stem	12.681
	SRR3591710	White floral bud	9.282
	SRR3591711	White flower	17.726
	SRR3591712	Green floral bud	11.859
	SRR3591713	Yellow flower	10.732
SRP173429	SRR8316895	Juvenile bud stage	11.152
	SRR8316896	Juvenile bud stage	18.344
	SRR8316897	Juvenile bud stage	7.343
	SRR8316894	Third green stage	6.566
	SRR8316900	Third green stage	18.219
	SRR8316901	Third green stage	17.366
	SRR8316898	Complete white stage	6.789
	SRR8316899	Complete white stage	22.773
	SRR8316903	Complete white stage	8.406
	SRR8316902	Silver flowering stage	7.205
	SRR8316904	Silver flowering stage	11.174
	SRR8316905	Silver flowering stage	3.286
	SRR8316906	Gold flowering stage	6.386
	SRR8316907	Gold flowering stage	11.440
	SRR8316908	Gold flowering stage	11.143
SRP132670	SRR6706286	Control	7.421
	SRR6706287	Light intensity 50%	7.554
	SRR6706288	Light intensity 20%	10.114
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.713
	CNS0095593	Slightly white alabastrum(diploid) 2	23.644
	CNS0095594	Slightly white alabastrum(diploid) 3	21.040
	CNS0095595	Whole white alabastrum(diploid) 2	13.855
	CNS0095596	Whole white alabastrum(diploid) 3	12.357
	CNS0095597	Whole white alabastrum(diploid) 4	14.414
	CNS0095598	Silvery flower (diploied) 1	14.293
	CNS0095599	Silvery flower (diploied) 2	14.443
	CNS0095600	Silvery flower (diploied) 3	13.968
	CNS0095601	Golden flower (diploid) 1	10.700
	CNS0095602	Golden flower (diploid) 2	8.183
	CNS0095603	Golden flower (diploid) 3	7.211
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.600
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.599
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.952
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.791
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.234
	CNS0095610	Silvery flower (tetraploid) 1	16.298
	CNS0095611	Silvery flower (tetraploid) 2	14.128
	CNS0095612	Silvery flower (tetraploid) 3	8.346
	CNS0095613	Golden flower (tetraploid) 1	12.594
	CNS0095614	Golden flower (tetraploid) 2	9.935
	CNS0095615	Golden flower (tetraploid) 3	4.867
CRA001975	CRR073297	Stem 1	11.951
	CRR073298	Stem 2	15.286
	CRR073299	Stem 3	13.351
	CRR073300	Leaf 1	11.167
	CRR073301	Leaf 2	12.952
	CRR073302	Leaf 3	8.610
	CRR073303	Juvenile bud 1	11.967
	CRR073304	Juvenile bud 2	8.639
	CRR073305	Juvenile bud 3	9.087
	CRR073306	Third green 1	3.344
	CRR073307	Third green 2	5.104
	CRR073308	Third green 3	3.101
	CRR073309	Second white 1	3.957
	CRR073310	Second white 2	3.443
	CRR073311	Second white 3	2.818
	CRR073312	Silver flowering 1	1.438
	CRR073313	Silver flowering 2	3.009
	CRR073314	Silver flowering 3	1.299
	CRR073315	Gold flowering 1	11.948
	CRR073316	Gold flowering 2	11.596
	CRR073317	Gold flowering 3	7.095
	CRR073318	Tawny withering 1	19.167
	CRR073319	Tawny withering 2	20.673
	CRR073320	Tawny withering 3	20.022