Gene detail

Detail information of GWHGAAZE025395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010248872.1	0	PREDICTED: trihelix transcription factor GT-1-like [Nelumbo nucifera]
Swissprot	tr\|Q9FX53\|TGT1_ARATH	2E-155	Trihelix transcription factor GT-1
trEMBL	tr\|F6I5L9\|F6I5L9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62237.1}
TAIR10	AT1G13450.1	2E-122	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	60601737	60613094	+
GWHAAZE00000007	mRNA	60601737	60613094	+
GWHAAZE00000007	exon	60601737	60602139	+
GWHAAZE00000007	exon	60604879	60604917	+
GWHAAZE00000007	exon	60611428	60611577	+
GWHAAZE00000007	exon	60612170	60612397	+
GWHAAZE00000007	exon	60612868	60613094	+
GWHAAZE00000007	CDS	60601737	60602139	+
GWHAAZE00000007	CDS	60604879	60604917	+
GWHAAZE00000007	CDS	60611428	60611577	+
GWHAAZE00000007	CDS	60612170	60612397	+
GWHAAZE00000007	CDS	60612868	60613094	+

Transcript Sequence
>GWHTAAZE025429 ATGATGATTTTAGGTGAAAGCAGTGGTTCGGACCACGAAGTGAAAGCTCCGAAGAAGAGAGCCGAAACTTGGATTCAGGAAGAGACTAGAAGCTTAATTACTTTCCGACGCGAGGTTGATGGTTTTTTCAACACCTCCAAGTCGAATAGACATTTGTGGGAACAGATCTCGGCCAAGATGAGGGATAAGGGATTCGATAGATCGCCGAATATGTGCACGGATAAGTGGAGGAATCTATTGAAGGAGTTTAAGAAGGTAAAGCACCAGTATAGGGGGAGTGGTTCTGCTAAAATGTTGTATTATAAGGAACTTGAGGAGTTGCTTGGAGATAGAGCGAAGAATGGGGCGTATAAAATTCCTAATTCTTCTAAGGCTGATTCTTACATGCAGTTTTCTGATAAAGGTCTGGAGAATGGTGATATCCCGTTTGGACCAGTCGAAGCGTCTACTTGGTGTACAGCTACTGGCCGTTCAACAGTCAACCTTGAAAGGCCTTTGGATAATGAAGGTGACCCTCTTGCCATTACTACAGCTGATGCTGTTACAGCCAGTGGCCTTCCTCCTTGGAATTGGAGAGAAACCCCTGCAAATGGTGGTGAAGGCCAACCTTCTTATGCTGGGAGGGTCATAACAGTCAAGTGGGGGGAGTACACCAGAAGAATTGGTATCGATGGCACTGCTGAAGCGATTAAGGAGGCAATCAAATCTGCATTCAGTTTACGAACTAGACGCACATTTTGGCTCGAGGACGAATATAATATCATCCGCAGTCTTGACAGGGACATGCCTCTCGGGAATTACACCCTACACCTCGATGAAGGCATATCCATAAAAATTTGCACTTATGACGAGTCTGATCGAATGGCGGTTCGAACGGAGGATAAGACGCTGTATACGGAGGATGATTTTCGTGATTTTCTAGCGCACCGGGGTTTGATAGGTTTAAGAGAGATAAATGGATATAACACTAATAGGTGCTTTGAATTTCTGGATGAACTGCGCGCGGGTGCAATGTACCAGGGGGTGGTGAGGCTTCTGGGTGACTAA

Network for GWHGAAZE025395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	23	107	1.50E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.333
	SRR3591706	second leaf	8.559
	SRR3591707	mature leaf	8.209
	SRR3591708	Shoot apex	22.290
	SRR3591709	Stem	19.905
	SRR3591710	White floral bud	12.959
	SRR3591711	White flower	17.080
	SRR3591712	Green floral bud	9.237
	SRR3591713	Yellow flower	16.900
SRP173429	SRR8316895	Juvenile bud stage	10.023
	SRR8316896	Juvenile bud stage	11.981
	SRR8316897	Juvenile bud stage	5.975
	SRR8316894	Third green stage	5.091
	SRR8316900	Third green stage	13.711
	SRR8316901	Third green stage	11.124
	SRR8316898	Complete white stage	4.333
	SRR8316899	Complete white stage	23.016
	SRR8316903	Complete white stage	7.577
	SRR8316902	Silver flowering stage	4.110
	SRR8316904	Silver flowering stage	8.421
	SRR8316905	Silver flowering stage	4.085
	SRR8316906	Gold flowering stage	13.211
	SRR8316907	Gold flowering stage	11.534
	SRR8316908	Gold flowering stage	15.317
SRP132670	SRR6706286	Control	23.972
	SRR6706287	Light intensity 50%	19.795
	SRR6706288	Light intensity 20%	18.519
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.698
	CNS0095593	Slightly white alabastrum(diploid) 2	13.559
	CNS0095594	Slightly white alabastrum(diploid) 3	11.212
	CNS0095595	Whole white alabastrum(diploid) 2	11.941
	CNS0095596	Whole white alabastrum(diploid) 3	8.700
	CNS0095597	Whole white alabastrum(diploid) 4	9.706
	CNS0095598	Silvery flower (diploied) 1	17.223
	CNS0095599	Silvery flower (diploied) 2	11.089
	CNS0095600	Silvery flower (diploied) 3	10.991
	CNS0095601	Golden flower (diploid) 1	16.607
	CNS0095602	Golden flower (diploid) 2	15.321
	CNS0095603	Golden flower (diploid) 3	13.716
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.717
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.134
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.729
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.872
	CNS0095610	Silvery flower (tetraploid) 1	13.560
	CNS0095611	Silvery flower (tetraploid) 2	12.152
	CNS0095612	Silvery flower (tetraploid) 3	16.961
	CNS0095613	Golden flower (tetraploid) 1	9.611
	CNS0095614	Golden flower (tetraploid) 2	10.594
	CNS0095615	Golden flower (tetraploid) 3	6.169
CRA001975	CRR073297	Stem 1	13.892
	CRR073298	Stem 2	14.264
	CRR073299	Stem 3	14.686
	CRR073300	Leaf 1	12.901
	CRR073301	Leaf 2	14.982
	CRR073302	Leaf 3	10.917
	CRR073303	Juvenile bud 1	11.157
	CRR073304	Juvenile bud 2	10.153
	CRR073305	Juvenile bud 3	11.612
	CRR073306	Third green 1	3.932
	CRR073307	Third green 2	2.851
	CRR073308	Third green 3	4.617
	CRR073309	Second white 1	5.449
	CRR073310	Second white 2	5.896
	CRR073311	Second white 3	5.421
	CRR073312	Silver flowering 1	3.796
	CRR073313	Silver flowering 2	5.264
	CRR073314	Silver flowering 3	3.586
	CRR073315	Gold flowering 1	12.406
	CRR073316	Gold flowering 2	9.199
	CRR073317	Gold flowering 3	8.129
	CRR073318	Tawny withering 1	13.027
	CRR073319	Tawny withering 2	12.714
	CRR073320	Tawny withering 3	17.712