Detail information of GWHGAAZE025390


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP16651.10unnamed protein product [Coffea canephora]
Swissprottr|Q9LU89|2A5N_ARATH0Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
trEMBLtr|A0A068V7K6|A0A068V7K6_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_135 {ECO:0000313|EMBL:CDP16651.1}
TAIR10AT3G26020.20Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6053168060536304-
GWHAAZE00000007mRNA6053168060536304-
GWHAAZE00000007exon6053511160536304-
GWHAAZE00000007exon6053327260533335-
GWHAAZE00000007exon6053168060532032-
GWHAAZE00000007CDS6053511160536304-
GWHAAZE00000007CDS6053327260533335-
GWHAAZE00000007CDS6053168060532032-
Transcript Sequence

Network for GWHGAAZE025390

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01603.21B56833988.10E-149
PF01603.21B564205131.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11584PPP2R5 mRNA surveillance pathway map03015
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Meiosis - yeastmap04113
Oocyte meiosismap04114
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728

Gene Ontology

GO term OntologyName
GO:0007165biological_processsignal transduction
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0019888molecular_functionprotein phosphatase regulator activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf48.688
SRR3591706second leaf19.711
SRR3591707mature leaf31.404
SRR3591708Shoot apex30.471
SRR3591709Stem46.960
SRR3591710White floral bud36.159
SRR3591711White flower45.573
SRR3591712Green floral bud34.144
SRR3591713Yellow flower45.659
SRP173429 SRR8316895Juvenile bud stage 20.510
SRR8316896Juvenile bud stage 25.024
SRR8316897Juvenile bud stage 11.442
SRR8316894Third green stage 9.064
SRR8316900Third green stage 23.507
SRR8316901Third green stage 25.351
SRR8316898Complete white stage 20.987
SRR8316899Complete white stage 42.462
SRR8316903Complete white stage 30.266
SRR8316902Silver flowering stage25.278
SRR8316904Silver flowering stage37.265
SRR8316905Silver flowering stage15.542
SRR8316906Gold flowering stage 54.365
SRR8316907Gold flowering stage 47.111
SRR8316908Gold flowering stage 55.823
SRP132670SRR6706286Control19.602
SRR6706287Light intensity 50%20.150
SRR6706288Light intensity 20%21.642
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.024
CNS0095593Slightly white alabastrum(diploid) 218.084
CNS0095594Slightly white alabastrum(diploid) 314.935
CNS0095595Whole white alabastrum(diploid) 216.735
CNS0095596Whole white alabastrum(diploid) 314.614
CNS0095597Whole white alabastrum(diploid) 415.683
CNS0095598Silvery flower (diploied) 126.387
CNS0095599Silvery flower (diploied) 219.695
CNS0095600Silvery flower (diploied) 343.732
CNS0095601Golden flower (diploid) 120.404
CNS0095602Golden flower (diploid) 246.928
CNS0095603Golden flower (diploid) 346.992
CNS0095604Slightly white alabastrum(tetraploid) 120.551
CNS0095605Slightly white alabastrum(tetraploid) 215.607
CNS0095606Slightly white alabastrum(tetraploid) 329.218
CNS0095607Whole white alabastrum(tetraploid) 115.278
CNS0095608Whole white alabastrum(tetraploid) 212.586
CNS0095609Whole white alabastrum(tetraploid) 320.766
CNS0095610Silvery flower (tetraploid) 140.266
CNS0095611Silvery flower (tetraploid) 239.389
CNS0095612Silvery flower (tetraploid) 366.661
CNS0095613Golden flower (tetraploid) 129.082
CNS0095614Golden flower (tetraploid) 236.819
CNS0095615Golden flower (tetraploid) 367.919
CRA001975CRR073297Stem 131.518
CRR073298Stem 227.351
CRR073299Stem 327.663
CRR073300Leaf 133.320
CRR073301Leaf 232.357
CRR073302Leaf 327.827
CRR073303Juvenile bud 127.523
CRR073304Juvenile bud 224.296
CRR073305Juvenile bud 335.225
CRR073306Third green 157.595
CRR073307Third green 243.315
CRR073308Third green 350.129
CRR073309Second white 171.464
CRR073310Second white 277.908
CRR073311Second white 375.046
CRR073312Silver flowering 166.295
CRR073313Silver flowering 270.596
CRR073314Silver flowering 349.055
CRR073315Gold flowering 127.828
CRR073316Gold flowering 230.681
CRR073317Gold flowering 327.652
CRR073318Tawny withering 156.805
CRR073319Tawny withering 245.910
CRR073320Tawny withering 354.157