Detail information of GWHGAAZE025383


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004304690.15.28971E-35PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Fragaria vesca subsp. vesca]
COGYP_003552156.13E-14succinate dehydrogenase and fumarate reductase iron-sulfur protein
Swissprottr|Q8LBZ7|SDHB1_ARATH5E-25Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial (Precursor)
trEMBLtr|A0A068V550|A0A068V550_COFCA9E-35Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial {ECO:0000256|RuleBase:RU361237}
TAIR10AT3G27380.24E-21succinate dehydrogenase 2-1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6047009760470375+
GWHAAZE00000007mRNA6047009760470375+
GWHAAZE00000007exon6047009760470375+
GWHAAZE00000007CDS6047009760470375+
Transcript Sequence

Network for GWHGAAZE025383

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00235SDHB, SDH2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Citrate cyclemap00020
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf158.032
SRR3591706second leaf72.322
SRR3591707mature leaf51.225
SRR3591708Shoot apex111.288
SRR3591709Stem107.150
SRR3591710White floral bud180.499
SRR3591711White flower155.095
SRR3591712Green floral bud223.100
SRR3591713Yellow flower138.464
SRP173429 SRR8316895Juvenile bud stage 68.519
SRR8316896Juvenile bud stage 107.960
SRR8316897Juvenile bud stage 57.700
SRR8316894Third green stage 47.066
SRR8316900Third green stage 177.381
SRR8316901Third green stage 161.169
SRR8316898Complete white stage 66.072
SRR8316899Complete white stage 128.432
SRR8316903Complete white stage 109.004
SRR8316902Silver flowering stage70.196
SRR8316904Silver flowering stage110.444
SRR8316905Silver flowering stage59.629
SRR8316906Gold flowering stage 174.501
SRR8316907Gold flowering stage 183.860
SRR8316908Gold flowering stage 183.685
SRP132670SRR6706286Control291.754
SRR6706287Light intensity 50%282.687
SRR6706288Light intensity 20%285.490
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.723
CNS0095593Slightly white alabastrum(diploid) 260.608
CNS0095594Slightly white alabastrum(diploid) 362.522
CNS0095595Whole white alabastrum(diploid) 271.893
CNS0095596Whole white alabastrum(diploid) 372.320
CNS0095597Whole white alabastrum(diploid) 459.456
CNS0095598Silvery flower (diploied) 144.197
CNS0095599Silvery flower (diploied) 253.039
CNS0095600Silvery flower (diploied) 3142.020
CNS0095601Golden flower (diploid) 149.018
CNS0095602Golden flower (diploid) 2122.543
CNS0095603Golden flower (diploid) 3105.036
CNS0095604Slightly white alabastrum(tetraploid) 196.895
CNS0095605Slightly white alabastrum(tetraploid) 268.309
CNS0095606Slightly white alabastrum(tetraploid) 3114.203
CNS0095607Whole white alabastrum(tetraploid) 185.287
CNS0095608Whole white alabastrum(tetraploid) 2109.411
CNS0095609Whole white alabastrum(tetraploid) 3169.179
CNS0095610Silvery flower (tetraploid) 1147.645
CNS0095611Silvery flower (tetraploid) 2134.677
CNS0095612Silvery flower (tetraploid) 3170.440
CNS0095613Golden flower (tetraploid) 163.945
CNS0095614Golden flower (tetraploid) 2118.505
CNS0095615Golden flower (tetraploid) 399.310
CRA001975CRR073297Stem 1111.813
CRR073298Stem 2131.609
CRR073299Stem 3135.229
CRR073300Leaf 1157.804
CRR073301Leaf 2152.898
CRR073302Leaf 3168.518
CRR073303Juvenile bud 1176.488
CRR073304Juvenile bud 2253.587
CRR073305Juvenile bud 3206.695
CRR073306Third green 1263.466
CRR073307Third green 2219.393
CRR073308Third green 3216.897
CRR073309Second white 1319.819
CRR073310Second white 2173.586
CRR073311Second white 3175.571
CRR073312Silver flowering 1161.219
CRR073313Silver flowering 2197.789
CRR073314Silver flowering 3161.088
CRR073315Gold flowering 158.203
CRR073316Gold flowering 256.192
CRR073317Gold flowering 361.885
CRR073318Tawny withering 1132.236
CRR073319Tawny withering 279.506
CRR073320Tawny withering 3106.212