Detail information of GWHGAAZE025374


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271417.10PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] [Vitis vinifera]
COGYP_003995319.16E-38NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Swissprottr|P52425|GPDA_CUPLA0Glycerol-3-phosphate dehydrogenase [NAD(+)]
trEMBLtr|D7SPY8|D7SPY8_VITVI0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}
TAIR10AT5G40610.18E-174NAD-dependent glycerol-3-phosphate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene6034579060350636-
GWHAAZE00000007mRNA6034579060350636-
GWHAAZE00000007exon6035029760350636-
GWHAAZE00000007exon6035006760350143-
GWHAAZE00000007exon6034989160349963-
GWHAAZE00000007exon6034866360348880-
GWHAAZE00000007exon6034805460348161-
GWHAAZE00000007exon6034751860347581-
GWHAAZE00000007exon6034738560347422-
GWHAAZE00000007exon6034714960347269-
GWHAAZE00000007exon6034700660347060-
GWHAAZE00000007exon6034682160346869-
GWHAAZE00000007exon6034616660346351-
GWHAAZE00000007exon6034579060345962-
GWHAAZE00000007CDS6035029760350636-
GWHAAZE00000007CDS6035006760350143-
GWHAAZE00000007CDS6034989160349963-
GWHAAZE00000007CDS6034866360348880-
GWHAAZE00000007CDS6034805460348161-
GWHAAZE00000007CDS6034751860347581-
GWHAAZE00000007CDS6034738560347422-
GWHAAZE00000007CDS6034714960347269-
GWHAAZE00000007CDS6034700660347060-
GWHAAZE00000007CDS6034682160346869-
GWHAAZE00000007CDS6034616960346351-
GWHAAZE00000007three_prime_UTR6034616660346168-
GWHAAZE00000007three_prime_UTR6034579060345962-
Transcript Sequence

Network for GWHGAAZE025374

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01210.24NAD_Gly3P_dh_N862528.10E-46
PF07479.15NAD_Gly3P_dh_C2754222.30E-46
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00006GPD1 Biosynthesis of secondary metabolites map01110
Glycerophospholipid metabolismmap00564
MAPK signaling pathway - yeastmap04011

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0006072biological_processglycerol-3-phosphate metabolic process
GO:0046168biological_processglycerol-3-phosphate catabolic process
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016491molecular_functionoxidoreductase activity
GO:0042803molecular_functionprotein homodimerization activity
GO:0051287molecular_functionNAD binding
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.772
SRR3591706second leaf3.220
SRR3591707mature leaf0.560
SRR3591708Shoot apex7.802
SRR3591709Stem3.145
SRR3591710White floral bud4.974
SRR3591711White flower4.561
SRR3591712Green floral bud6.198
SRR3591713Yellow flower3.861
SRP173429 SRR8316895Juvenile bud stage 4.418
SRR8316896Juvenile bud stage 7.572
SRR8316897Juvenile bud stage 2.160
SRR8316894Third green stage 2.867
SRR8316900Third green stage 6.201
SRR8316901Third green stage 6.800
SRR8316898Complete white stage 0.880
SRR8316899Complete white stage 1.912
SRR8316903Complete white stage 0.915
SRR8316902Silver flowering stage0.619
SRR8316904Silver flowering stage5.140
SRR8316905Silver flowering stage0.518
SRR8316906Gold flowering stage 0.539
SRR8316907Gold flowering stage 1.452
SRR8316908Gold flowering stage 0.500
SRP132670SRR6706286Control2.474
SRR6706287Light intensity 50%2.692
SRR6706288Light intensity 20%2.948
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.964
CNS0095593Slightly white alabastrum(diploid) 24.197
CNS0095594Slightly white alabastrum(diploid) 36.265
CNS0095595Whole white alabastrum(diploid) 27.893
CNS0095596Whole white alabastrum(diploid) 36.195
CNS0095597Whole white alabastrum(diploid) 46.470
CNS0095598Silvery flower (diploied) 13.546
CNS0095599Silvery flower (diploied) 25.532
CNS0095600Silvery flower (diploied) 33.494
CNS0095601Golden flower (diploid) 11.761
CNS0095602Golden flower (diploid) 22.327
CNS0095603Golden flower (diploid) 32.407
CNS0095604Slightly white alabastrum(tetraploid) 15.152
CNS0095605Slightly white alabastrum(tetraploid) 27.132
CNS0095606Slightly white alabastrum(tetraploid) 34.005
CNS0095607Whole white alabastrum(tetraploid) 15.136
CNS0095608Whole white alabastrum(tetraploid) 27.196
CNS0095609Whole white alabastrum(tetraploid) 34.158
CNS0095610Silvery flower (tetraploid) 16.006
CNS0095611Silvery flower (tetraploid) 25.676
CNS0095612Silvery flower (tetraploid) 36.777
CNS0095613Golden flower (tetraploid) 10.849
CNS0095614Golden flower (tetraploid) 215.385
CNS0095615Golden flower (tetraploid) 32.665
CRA001975CRR073297Stem 17.486
CRR073298Stem 26.177
CRR073299Stem 35.664
CRR073300Leaf 16.137
CRR073301Leaf 26.501
CRR073302Leaf 34.764
CRR073303Juvenile bud 14.666
CRR073304Juvenile bud 21.970
CRR073305Juvenile bud 33.709
CRR073306Third green 11.971
CRR073307Third green 23.691
CRR073308Third green 35.275
CRR073309Second white 10.647
CRR073310Second white 20.899
CRR073311Second white 30.455
CRR073312Silver flowering 10.734
CRR073313Silver flowering 21.055
CRR073314Silver flowering 30.700
CRR073315Gold flowering 11.963
CRR073316Gold flowering 20.969
CRR073317Gold flowering 33.490
CRR073318Tawny withering 112.450
CRR073319Tawny withering 23.446
CRR073320Tawny withering 310.987