Gene detail

Detail information of GWHGAAZE025336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011005136.1	0	PREDICTED: WD repeat-containing protein 82-like [Populus euphratica]
COG	YP_007054747.1	7E-21	WD40 repeat-containing protein
Swissprot	tr\|P93107\|PF20_CHLRE	4E-10	Flagellar WD repeat-containing protein Pf20
trEMBL	tr\|A0A061EC27\|A0A061EC27_THECC	0	Transducin/WD40 repeat-like superfamily protein {ECO:0000313\|EMBL:EOY02486.1}
TAIR10	AT5G14530.1	5E-152	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59806855	59814558	+
GWHAAZE00000007	mRNA	59806855	59814558	+
GWHAAZE00000007	exon	59806855	59806935	+
GWHAAZE00000007	exon	59808754	59808854	+
GWHAAZE00000007	exon	59809109	59809218	+
GWHAAZE00000007	exon	59809310	59809376	+
GWHAAZE00000007	exon	59809815	59809914	+
GWHAAZE00000007	exon	59810733	59810849	+
GWHAAZE00000007	exon	59810939	59811076	+
GWHAAZE00000007	exon	59811163	59811244	+
GWHAAZE00000007	exon	59812595	59812644	+
GWHAAZE00000007	exon	59814346	59814558	+
GWHAAZE00000007	CDS	59806855	59806935	+
GWHAAZE00000007	CDS	59808754	59808854	+
GWHAAZE00000007	CDS	59809109	59809218	+
GWHAAZE00000007	CDS	59809310	59809376	+
GWHAAZE00000007	CDS	59809815	59809914	+
GWHAAZE00000007	CDS	59810733	59810849	+
GWHAAZE00000007	CDS	59810939	59811076	+
GWHAAZE00000007	CDS	59811163	59811244	+
GWHAAZE00000007	CDS	59812595	59812644	+
GWHAAZE00000007	CDS	59814346	59814558	+

Transcript Sequence
>GWHTAAZE025370 ATGAAGATGACTACTTCGCTCACAGAACTCAACGACGACATTGTTCGTAGTATGTCAATTGGAGCCGTCTTCTCAGATTTCGTTGGAAAGATAAATTCCCTTGATTTTCATCGTACTGCGGATTTATTGGTTACAGCTTGTGAGGATGATTCTGTGCGATTATATGACATAGCAAATGCTAAGTTGCTGAAAACCACATATCATAAGAAGCATGGTGCTGATCGTATATGCTTTACCCATCATCCTAGTTCTGTTTTATGCTCCTCAAGATATAATTTGGATTCGGTTGGAGAATCATTACGGTATCTCTCGATGTACGACAACCGCTGCCTTCGTTACTTCAAGGGGCATAAAGAGAGGATTGTGTCACTCTGTATGTCCCCAGTTAATGACAGCTTCATGTCTGGTTCTCTTGACCATAGTGTCAGAATATGGGATCTTCGTGTGAATGCTTGCCAGGGAATTTTACGTCTACGAGGTAGGCCTACAGTTGCTTATGACCAACAAGGCCTTGTCTTTGCAGTAGCAATGGAAGGGGGTGCTATCAAATTATTTGATTCACGATCATATGACAAGGGTCCGTTTGACACTTTCTTAGTTGGTGGAGATAGGGCTGAGGTCTGCGATATTAAATTCAGTAATGACGGTAAATCAATGCTTTTGACTACCACAAGTAACAACATATATGTTCTTGATGCATATTTGGGAGAAAAGCGGTGTGGATTCAGTGTGGATCCATCTCCAAATACAACAATAGAGGCAACTTTTACTCCAGATGGCCAATACGTGGTTTCAGGATCAGGAGATGGGAATTTGCATGCATGGAGCATCAACACAAGAAATAAGGTGGGTTGCTGGGATAGCCACATAGGTATAGTAGAGTGCTTGAAATGGGCGCCCCGAAGGGTGATGTTTGTTGCAGCCTCCTCGGTCCTGACATTTTGGATACCCAATAACAACACCACCACCACCACTAATAGTACCAACCCTAGCTCCGATCCTGGCACCACCCCCCTCAACAACGACGGTGGTGGTGGCGGCGGTAGTGGAGCTCAATGA

Network for GWHGAAZE025336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	30	56	0.0097
PF00400.33	WD40	109	146	7.20E-07
PF00400.33	WD40	256	275	0.1

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14962	WDR82, SWD2, CPS35	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.441
	SRR3591706	second leaf	10.441
	SRR3591707	mature leaf	7.395
	SRR3591708	Shoot apex	12.022
	SRR3591709	Stem	13.243
	SRR3591710	White floral bud	11.195
	SRR3591711	White flower	14.481
	SRR3591712	Green floral bud	16.909
	SRR3591713	Yellow flower	13.207
SRP173429	SRR8316895	Juvenile bud stage	11.467
	SRR8316896	Juvenile bud stage	14.216
	SRR8316897	Juvenile bud stage	5.294
	SRR8316894	Third green stage	6.543
	SRR8316900	Third green stage	15.501
	SRR8316901	Third green stage	14.127
	SRR8316898	Complete white stage	4.533
	SRR8316899	Complete white stage	24.409
	SRR8316903	Complete white stage	6.340
	SRR8316902	Silver flowering stage	5.191
	SRR8316904	Silver flowering stage	7.100
	SRR8316905	Silver flowering stage	2.256
	SRR8316906	Gold flowering stage	10.837
	SRR8316907	Gold flowering stage	11.292
	SRR8316908	Gold flowering stage	10.041
SRP132670	SRR6706286	Control	9.421
	SRR6706287	Light intensity 50%	12.942
	SRR6706288	Light intensity 20%	12.041
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.458
	CNS0095593	Slightly white alabastrum(diploid) 2	14.689
	CNS0095594	Slightly white alabastrum(diploid) 3	10.558
	CNS0095595	Whole white alabastrum(diploid) 2	15.402
	CNS0095596	Whole white alabastrum(diploid) 3	10.938
	CNS0095597	Whole white alabastrum(diploid) 4	10.150
	CNS0095598	Silvery flower (diploied) 1	17.704
	CNS0095599	Silvery flower (diploied) 2	11.709
	CNS0095600	Silvery flower (diploied) 3	9.466
	CNS0095601	Golden flower (diploid) 1	10.194
	CNS0095602	Golden flower (diploid) 2	8.917
	CNS0095603	Golden flower (diploid) 3	9.616
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.455
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.406
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.121
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.839
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.077
	CNS0095610	Silvery flower (tetraploid) 1	14.979
	CNS0095611	Silvery flower (tetraploid) 2	15.060
	CNS0095612	Silvery flower (tetraploid) 3	10.681
	CNS0095613	Golden flower (tetraploid) 1	10.553
	CNS0095614	Golden flower (tetraploid) 2	14.035
	CNS0095615	Golden flower (tetraploid) 3	9.152
CRA001975	CRR073297	Stem 1	9.115
	CRR073298	Stem 2	9.175
	CRR073299	Stem 3	8.219
	CRR073300	Leaf 1	8.561
	CRR073301	Leaf 2	8.140
	CRR073302	Leaf 3	9.644
	CRR073303	Juvenile bud 1	6.322
	CRR073304	Juvenile bud 2	5.454
	CRR073305	Juvenile bud 3	8.240
	CRR073306	Third green 1	1.015
	CRR073307	Third green 2	1.173
	CRR073308	Third green 3	2.002
	CRR073309	Second white 1	3.398
	CRR073310	Second white 2	2.706
	CRR073311	Second white 3	2.010
	CRR073312	Silver flowering 1	1.957
	CRR073313	Silver flowering 2	2.536
	CRR073314	Silver flowering 3	2.854
	CRR073315	Gold flowering 1	2.897
	CRR073316	Gold flowering 2	4.342
	CRR073317	Gold flowering 3	3.384
	CRR073318	Tawny withering 1	4.364
	CRR073319	Tawny withering 2	4.890
	CRR073320	Tawny withering 3	5.213