Gene detail

Detail information of GWHGAAZE025319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP31079.1	0	hypothetical protein JCGZ_11455 [Jatropha curcas]
COG	YP_004671386.1	4E-94	anthranilate phosphoribosyltransferase
Swissprot	tr\|Q02166\|TRPD_ARATH	2E-170	Anthranilate phosphoribosyltransferase, chloroplastic (Precursor)
trEMBL	tr\|A0A067KGW1\|A0A067KGW1_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP31079.1}
TAIR10	AT5G17990.1	1E-128	tryptophan biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	59530946	59533874	+
GWHAAZE00000007	mRNA	59530946	59533874	+
GWHAAZE00000007	exon	59530946	59531095	+
GWHAAZE00000007	exon	59531343	59531504	+
GWHAAZE00000007	exon	59531653	59531838	+
GWHAAZE00000007	exon	59532392	59532580	+
GWHAAZE00000007	exon	59532719	59532809	+
GWHAAZE00000007	exon	59532937	59532996	+
GWHAAZE00000007	exon	59533292	59533410	+
GWHAAZE00000007	exon	59533695	59533874	+
GWHAAZE00000007	CDS	59530946	59531095	+
GWHAAZE00000007	CDS	59531343	59531504	+
GWHAAZE00000007	CDS	59531653	59531838	+
GWHAAZE00000007	CDS	59532392	59532580	+
GWHAAZE00000007	CDS	59532719	59532809	+
GWHAAZE00000007	CDS	59532937	59532996	+
GWHAAZE00000007	CDS	59533292	59533410	+
GWHAAZE00000007	CDS	59533695	59533874	+

Transcript Sequence
>GWHTAAZE025353 ATGCAGTTGATTGACTCTTTGTTAAATGGGGAGGACTTGACTGAAGAGGAGGCTGAAGCTTCCCTCAATTTCTTGCTCACTGATGGCACTGAAGCTGTGATTAGTGCTTTTCTTGTTCTCCTAAGAGCCAAAGGGGAAACTTTTGAGGAAATTGTAGGATTTGCAAGGGCTATGATCAAATGTTGTCAGAAGGTTGAAGGGATACATAATGCCGTGGACATTGTTGGAACCGGAGGCGATGGGGCAAACACTGTAAACATCTCGACCGGGGCAGCTATACTTGCTGCTGCTTGTGGGGCGAAAGTTGCAAAGCGTGGAAATGTGGAATTAGCATTCCCAACATACTCTTATTCTGTCAGGGATCTTAGGGAAAAAGTCAGAATAACAAGAATTGGACTAGTGTTTGTTTTGCAGCAAGGAAATCGGTCGAGTTCTTCTGCTTGTGGAAGTGCCGATGTTTTGGAAGCCTTGGGAGTAGTCATTGACTTGGAGCCTGAGGGGGTGAAAAGATGTATGGAAGAAGTGGGTATTGGTTTTATGATGTCTCCTAAATATCATCCAGCAATGAAGATTGTTGCACCTGTTAGGAAGAAGCTAGGAGTGAAAACCGTATTTAATATCTTGGGTCCCATGTTGAGTCCAGCACGGGTACCTTTCGCAGTTGTTGGTGTGTACAAGGAAGATTTAGTAAATAAGATGGCTAAAGCTCTGCAAAGATATGGAATGAAAAGAGCGTTAGTTGTTCATTCAGAGGGGCTAGATGAGATGAGTCCTCTAGGACCTGGAATTGTTTTCAACATCACACCTGAAAAGGTTCAGAAGTCCAATTTTGACCCATTGGATTTTGGTATTCCCCGCTGCACTGTTGAAGACTTGCGAGGGGGAGGCCCAGAATATAATGCAGAGATACTAAGACGTGTACTATCCGGTGAAAGTGGACCCATTGCAGATGCATTTATCCTAAACGCAGCGGCAGCATTACTAGTAAGTGGGATTGTTAGCAGCCTCGCCCAAGGGGTAGAGTTGGCCCGCGAAACTCATCAATCAGGGAAGGCTCTCAATACGCTCAATTGTTGGATTAATGTCTCAAGTGTAAGTGAAAATCATCTTCACTATTTCTGTTTCTGTTTCGTGTAA

Network for GWHGAAZE025319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02885.18	Glycos_trans_3N	2	59	5.80E-14
PF00591.22	Glycos_transf_3	70	107	2.00E-14
PF00591.22	Glycos_transf_3	136	353	3.30E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00766	trpD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups
GO:0004048	molecular_function	anthranilate phosphoribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.007
	SRR3591706	second leaf	12.234
	SRR3591707	mature leaf	1.611
	SRR3591708	Shoot apex	19.620
	SRR3591709	Stem	1.193
	SRR3591710	White floral bud	1.521
	SRR3591711	White flower	0.758
	SRR3591712	Green floral bud	14.662
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	16.343
	SRR8316896	Juvenile bud stage	21.995
	SRR8316897	Juvenile bud stage	8.614
	SRR8316894	Third green stage	11.037
	SRR8316900	Third green stage	36.905
	SRR8316901	Third green stage	30.286
	SRR8316898	Complete white stage	1.569
	SRR8316899	Complete white stage	14.189
	SRR8316903	Complete white stage	1.195
	SRR8316902	Silver flowering stage	0.440
	SRR8316904	Silver flowering stage	0.118
	SRR8316905	Silver flowering stage	0.206
	SRR8316906	Gold flowering stage	0.735
	SRR8316907	Gold flowering stage	0.599
	SRR8316908	Gold flowering stage	0.267
SRP132670	SRR6706286	Control	28.519
	SRR6706287	Light intensity 50%	31.502
	SRR6706288	Light intensity 20%	40.963
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.078
	CNS0095593	Slightly white alabastrum(diploid) 2	16.592
	CNS0095594	Slightly white alabastrum(diploid) 3	12.632
	CNS0095595	Whole white alabastrum(diploid) 2	14.364
	CNS0095596	Whole white alabastrum(diploid) 3	13.674
	CNS0095597	Whole white alabastrum(diploid) 4	8.643
	CNS0095598	Silvery flower (diploied) 1	11.459
	CNS0095599	Silvery flower (diploied) 2	7.587
	CNS0095600	Silvery flower (diploied) 3	1.678
	CNS0095601	Golden flower (diploid) 1	5.580
	CNS0095602	Golden flower (diploid) 2	1.898
	CNS0095603	Golden flower (diploid) 3	1.934
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.216
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.006
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.757
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.394
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.516
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.162
	CNS0095610	Silvery flower (tetraploid) 1	0.512
	CNS0095611	Silvery flower (tetraploid) 2	0.881
	CNS0095612	Silvery flower (tetraploid) 3	0.979
	CNS0095613	Golden flower (tetraploid) 1	0.062
	CNS0095614	Golden flower (tetraploid) 2	0.276
	CNS0095615	Golden flower (tetraploid) 3	0.177
CRA001975	CRR073297	Stem 1	20.517
	CRR073298	Stem 2	22.426
	CRR073299	Stem 3	17.049
	CRR073300	Leaf 1	30.106
	CRR073301	Leaf 2	20.598
	CRR073302	Leaf 3	22.479
	CRR073303	Juvenile bud 1	17.826
	CRR073304	Juvenile bud 2	9.529
	CRR073305	Juvenile bud 3	11.755
	CRR073306	Third green 1	0.869
	CRR073307	Third green 2	0.352
	CRR073308	Third green 3	0.356
	CRR073309	Second white 1	0.642
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.998
	CRR073316	Gold flowering 2	9.117
	CRR073317	Gold flowering 3	8.298
	CRR073318	Tawny withering 1	5.238
	CRR073319	Tawny withering 2	4.103
	CRR073320	Tawny withering 3	6.250