Gene detail

Detail information of GWHGAAZE025261

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007011064.1	0	Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
COG	YP_003300732.1	4E-34	metallophosphoesterase
Swissprot	tr\|Q6NLV4\|FY_ARATH	0	Flowering time control protein FY
trEMBL	tr\|A0A061FYJ3\|A0A061FYJ3_THECC	0	Transducin/WD40 repeat-like superfamily protein {ECO:0000313\|EMBL:EOY19874.1}
TAIR10	AT5G13480.2	5E-172	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	58376899	58386218	+
GWHAAZE00000007	mRNA	58376899	58386218	+
GWHAAZE00000007	exon	58376899	58377057	+
GWHAAZE00000007	exon	58377148	58377230	+
GWHAAZE00000007	exon	58377339	58377410	+
GWHAAZE00000007	exon	58377533	58377630	+
GWHAAZE00000007	exon	58378324	58378383	+
GWHAAZE00000007	exon	58378741	58378801	+
GWHAAZE00000007	exon	58378889	58378976	+
GWHAAZE00000007	exon	58379083	58379146	+
GWHAAZE00000007	exon	58380823	58380901	+
GWHAAZE00000007	exon	58382913	58383002	+
GWHAAZE00000007	exon	58383778	58383866	+
GWHAAZE00000007	exon	58384171	58384703	+
GWHAAZE00000007	exon	58385103	58385387	+
GWHAAZE00000007	exon	58386093	58386218	+
GWHAAZE00000007	CDS	58376899	58377057	+
GWHAAZE00000007	CDS	58377148	58377230	+
GWHAAZE00000007	CDS	58377339	58377410	+
GWHAAZE00000007	CDS	58377533	58377630	+
GWHAAZE00000007	CDS	58378324	58378383	+
GWHAAZE00000007	CDS	58378741	58378801	+
GWHAAZE00000007	CDS	58378889	58378976	+
GWHAAZE00000007	CDS	58379083	58379146	+
GWHAAZE00000007	CDS	58380823	58380901	+
GWHAAZE00000007	CDS	58382913	58383002	+
GWHAAZE00000007	CDS	58383778	58383866	+
GWHAAZE00000007	CDS	58384171	58384703	+
GWHAAZE00000007	CDS	58385103	58385387	+
GWHAAZE00000007	CDS	58386093	58386218	+

Transcript Sequence
>GWHTAAZE025295 ATGCTAGATGTTTTGGTGTGCTTAAAATATTGTGATTGCCCTGACACTTGCCTTTGTTTAAAGTGGACCCCTACTGGCAGGCGTCTTATTACAGGCTCTCAAAGCGGGGAATTCACTCTCTGGAACGGACAGTCTTTTAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATCAGGTCTATGGTATGGAGTTACAATGACAACTGGATGGTTACTGGTGATGACGGTGGCTCAATAAAGTATTGGCAAAATAACATGAACAATGTGAAGGCCAATAAATCTGCCCATAAAGAATCAGTCCGTGACTTAAGTTTCTGTAGGACAGATCTGAAGTTCTGTTCTTGCTCTGATGACACTACTGTTAAAGTTTGGGACTTCGCTCGGTGTCAAGAAGAGCGTTCATTATCCGGCCATGGTTGGGATGTGAAGACTGTTGACTGGCACCCTACCAAGTCATTACTAGTTTCAGGAGGGAAAGACAACCTTGTGAAGCTATGGGATGCAAAATCGGGGAGGGAGCTTAGTTCATTCCATGGGCACAAGAATACTGTTCTTTGTGTCAAATGGAATCAAAATGGTAACTGGGTGCTAACTGCTTCAAAGGATCAAATCATCAAGCTTTATGATATAAGGGCTATGAAGGAACTTCAGTCTTTTCGTGGGCACCAGAAGGATGTGACAGCACTGGCTTGGCACCCATTCCATGAAGAATATTTTGTTAGCGGGAGTTTTGATGGTGCAATTTTTCACTGGCTTGTTGGGCACGACACTCCTCAGGTGGAAATTCAAAATGCACATGATAACAGTGTTTGGGACCTTGCATGGCATCCTATTGGATATCTTCTTTGCAGTGGTAGCAATGACCACACAACAAAGTTCTGGTGCAGAAATAGGCCTGGGGATCCAGCTCGTGATAAATTCAACGTGGGTCATAATCAAGGTTACGGTGAGCAAAACCCTGCGCTTGCTGGTCGCATGCCTGGCAATTTCCCAGGAGCCGAGGCACCCACAACTCCGGGGCCATTTGCTCCTGGTTTGACAAGAAATGAGGGTACAATTCCAGGTATCGGAGTTGCAATGCCATTATCCATTCCTTCACTCGATACATCAGCTCAGGGAGACCAAAAGCCGCCTATGTCAGCCTCGATGCCTATGGGAGCTCCTCCTCTTCCGCCTGGTCCACACCCATCTCTTTTTGCAGCAAACCAGCAGCAGCAAGCTTACCAACAAAATGCCCAACAGCACCACCAAGGCCAAGGCCACCCACAGCAAATGACCTCTATGCCCCTGCCACCTCCAAATATGCAGCAGCTACAGCATCCATCCCATTTACCTCTGCTACCACATCCTCATTTACCTCGCCCTCCACCTCAGCTAGCGCCGCTTAATATGCCTTCAGGCATGCCGCCGTCCTCAATGCCTGGATCTATGCCAATGCCAACTTCACTTTCCATGCCTATGCATGGTCCAATGACACCTTTTGTGTTGACATCTATTTATTCTCTTGTTCAGGGGATGCAAGGTGCAATGAATCAGATGGTTCCTCAAATGCCACAGAACCATTATATGGGCATGAATCCTATGCACTCGGGATCAATACCACAAGGCAGTGCACCTTCAGGGGGAATGCCTAATGGGATGCAAAATATGCAGGGCCCTTCAAATGCAAGTGGGATGCAAATGTATACACCAGGGGGTGCATTTAACCGCCCACAAGGTGGGCAGATGCCGCAGATGCAGGGGCTTAATCCATACCAGAGGGGGAATATCGGTAATGCAGATACGGTGGTGGCTACGGTTGTTGGAGTAGTGGATATGATGGTGGTTGCAGGCGGCAATGGTCGTACATGTGGATATGGTGTAATGGATGTGGTCATGTACTAA

Network for GWHGAAZE025261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	50	83	0.0022
PF00400.33	WD40	95	126	0.0012
PF00400.33	WD40	131	168	5.30E-07
PF00400.33	WD40	173	210	5.80E-08
PF00400.33	WD40	215	252	0.00091
PF00400.33	WD40	266	295	0.00023

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K15542	PFS2	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.235
	SRR3591706	second leaf	12.906
	SRR3591707	mature leaf	11.010
	SRR3591708	Shoot apex	29.673
	SRR3591709	Stem	18.896
	SRR3591710	White floral bud	19.377
	SRR3591711	White flower	33.994
	SRR3591712	Green floral bud	22.287
	SRR3591713	Yellow flower	30.330
SRP173429	SRR8316895	Juvenile bud stage	13.822
	SRR8316896	Juvenile bud stage	18.604
	SRR8316897	Juvenile bud stage	8.374
	SRR8316894	Third green stage	7.580
	SRR8316900	Third green stage	18.645
	SRR8316901	Third green stage	19.053
	SRR8316898	Complete white stage	4.335
	SRR8316899	Complete white stage	18.602
	SRR8316903	Complete white stage	12.579
	SRR8316902	Silver flowering stage	8.152
	SRR8316904	Silver flowering stage	12.177
	SRR8316905	Silver flowering stage	5.659
	SRR8316906	Gold flowering stage	18.025
	SRR8316907	Gold flowering stage	22.435
	SRR8316908	Gold flowering stage	18.664
SRP132670	SRR6706286	Control	19.979
	SRR6706287	Light intensity 50%	21.725
	SRR6706288	Light intensity 20%	19.751
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.877
	CNS0095593	Slightly white alabastrum(diploid) 2	15.042
	CNS0095594	Slightly white alabastrum(diploid) 3	10.806
	CNS0095595	Whole white alabastrum(diploid) 2	10.248
	CNS0095596	Whole white alabastrum(diploid) 3	9.334
	CNS0095597	Whole white alabastrum(diploid) 4	9.781
	CNS0095598	Silvery flower (diploied) 1	16.573
	CNS0095599	Silvery flower (diploied) 2	12.229
	CNS0095600	Silvery flower (diploied) 3	20.854
	CNS0095601	Golden flower (diploid) 1	13.274
	CNS0095602	Golden flower (diploid) 2	20.514
	CNS0095603	Golden flower (diploid) 3	18.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.107
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.148
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.977
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.036
	CNS0095610	Silvery flower (tetraploid) 1	24.662
	CNS0095611	Silvery flower (tetraploid) 2	23.898
	CNS0095612	Silvery flower (tetraploid) 3	26.908
	CNS0095613	Golden flower (tetraploid) 1	16.185
	CNS0095614	Golden flower (tetraploid) 2	18.378
	CNS0095615	Golden flower (tetraploid) 3	28.392
CRA001975	CRR073297	Stem 1	20.510
	CRR073298	Stem 2	21.792
	CRR073299	Stem 3	20.820
	CRR073300	Leaf 1	24.924
	CRR073301	Leaf 2	21.705
	CRR073302	Leaf 3	13.061
	CRR073303	Juvenile bud 1	14.815
	CRR073304	Juvenile bud 2	12.595
	CRR073305	Juvenile bud 3	22.328
	CRR073306	Third green 1	7.621
	CRR073307	Third green 2	5.471
	CRR073308	Third green 3	7.751
	CRR073309	Second white 1	10.910
	CRR073310	Second white 2	7.555
	CRR073311	Second white 3	9.340
	CRR073312	Silver flowering 1	12.842
	CRR073313	Silver flowering 2	15.984
	CRR073314	Silver flowering 3	13.343
	CRR073315	Gold flowering 1	6.698
	CRR073316	Gold flowering 2	12.653
	CRR073317	Gold flowering 3	7.892
	CRR073318	Tawny withering 1	11.524
	CRR073319	Tawny withering 2	11.596
	CRR073320	Tawny withering 3	15.391