Detail information of GWHGAAZE025256


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775852.15.3675E-136PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nicotiana sylvestris]
trEMBLtr|A5B6W8|A5B6W8_VITVI3E-136Putative uncharacterized protein {ECO:0000313|EMBL:CAN61017.1}
TAIR10AT1G63780.15E-96Ribosomal RNA processing Brix domain protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5826024858273292+
GWHAAZE00000007mRNA5826024858273292+
GWHAAZE00000007exon5826024858260359+
GWHAAZE00000007exon5826234458262453+
GWHAAZE00000007exon5826387458264017+
GWHAAZE00000007exon5826411358264202+
GWHAAZE00000007exon5826544758265553+
GWHAAZE00000007exon5827317858273292+
GWHAAZE00000007CDS5826024858260359+
GWHAAZE00000007CDS5826234458262453+
GWHAAZE00000007CDS5826387458264017+
GWHAAZE00000007CDS5826411358264202+
GWHAAZE00000007CDS5826544758265553+
GWHAAZE00000007CDS5827317858273292+
Transcript Sequence

Network for GWHGAAZE025256

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04427.19Brix762156.20E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14561IMP4 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.744
SRR3591706second leaf29.646
SRR3591707mature leaf34.722
SRR3591708Shoot apex40.924
SRR3591709Stem41.836
SRR3591710White floral bud48.615
SRR3591711White flower57.058
SRR3591712Green floral bud51.846
SRR3591713Yellow flower58.757
SRP173429 SRR8316895Juvenile bud stage 31.393
SRR8316896Juvenile bud stage 41.193
SRR8316897Juvenile bud stage 18.848
SRR8316894Third green stage 19.383
SRR8316900Third green stage 45.693
SRR8316901Third green stage 42.275
SRR8316898Complete white stage 19.942
SRR8316899Complete white stage 62.661
SRR8316903Complete white stage 28.457
SRR8316902Silver flowering stage22.495
SRR8316904Silver flowering stage33.910
SRR8316905Silver flowering stage14.727
SRR8316906Gold flowering stage 45.919
SRR8316907Gold flowering stage 46.722
SRR8316908Gold flowering stage 53.842
SRP132670SRR6706286Control17.783
SRR6706287Light intensity 50%23.539
SRR6706288Light intensity 20%25.080
CNP0000432CNS0095592Slightly white alabastrum(diploid) 129.648
CNS0095593Slightly white alabastrum(diploid) 225.321
CNS0095594Slightly white alabastrum(diploid) 333.597
CNS0095595Whole white alabastrum(diploid) 224.492
CNS0095596Whole white alabastrum(diploid) 325.416
CNS0095597Whole white alabastrum(diploid) 426.230
CNS0095598Silvery flower (diploied) 124.982
CNS0095599Silvery flower (diploied) 227.366
CNS0095600Silvery flower (diploied) 347.600
CNS0095601Golden flower (diploid) 125.776
CNS0095602Golden flower (diploid) 247.795
CNS0095603Golden flower (diploid) 345.961
CNS0095604Slightly white alabastrum(tetraploid) 135.722
CNS0095605Slightly white alabastrum(tetraploid) 231.436
CNS0095606Slightly white alabastrum(tetraploid) 338.294
CNS0095607Whole white alabastrum(tetraploid) 122.331
CNS0095608Whole white alabastrum(tetraploid) 219.391
CNS0095609Whole white alabastrum(tetraploid) 331.837
CNS0095610Silvery flower (tetraploid) 140.247
CNS0095611Silvery flower (tetraploid) 238.237
CNS0095612Silvery flower (tetraploid) 346.131
CNS0095613Golden flower (tetraploid) 130.346
CNS0095614Golden flower (tetraploid) 234.579
CNS0095615Golden flower (tetraploid) 348.193
CRA001975CRR073297Stem 134.618
CRR073298Stem 231.965
CRR073299Stem 338.564
CRR073300Leaf 135.840
CRR073301Leaf 227.807
CRR073302Leaf 339.947
CRR073303Juvenile bud 138.109
CRR073304Juvenile bud 241.722
CRR073305Juvenile bud 329.892
CRR073306Third green 124.384
CRR073307Third green 230.564
CRR073308Third green 322.276
CRR073309Second white 124.941
CRR073310Second white 233.115
CRR073311Second white 327.960
CRR073312Silver flowering 125.869
CRR073313Silver flowering 219.715
CRR073314Silver flowering 318.140
CRR073315Gold flowering 131.568
CRR073316Gold flowering 237.461
CRR073317Gold flowering 321.384
CRR073318Tawny withering 131.148
CRR073319Tawny withering 235.675
CRR073320Tawny withering 335.172