Gene detail

Detail information of GWHGAAZE025229

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007008757.1	0	Cytokinin oxidase/dehydrogenase 6 isoform 1 [Theobroma cacao]
COG	YP_007093009.1	5E-71	FAD linked oxidase domain-containing protein
Swissprot	tr\|Q9LY71\|CKX6_ARATH	0	Cytokinin dehydrogenase 6 (Precursor)
trEMBL	tr\|A0A061FLK6\|A0A061FLK6_THECC	0	Cytokinin oxidase/dehydrogenase 6 isoform 1 {ECO:0000313\|EMBL:EOY17567.1}
TAIR10	AT3G63440.1	0	cytokinin oxidase/dehydrogenase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	57759698	57762394	-
GWHAAZE00000007	mRNA	57759698	57762394	-
GWHAAZE00000007	exon	57759698	57759833	-
GWHAAZE00000007	exon	57760325	57760587	-
GWHAAZE00000007	exon	57760766	57761026	-
GWHAAZE00000007	exon	57761130	57761257	-
GWHAAZE00000007	exon	57761776	57762394	-
GWHAAZE00000007	CDS	57761776	57762394	-
GWHAAZE00000007	CDS	57761130	57761257	-
GWHAAZE00000007	CDS	57760766	57761026	-
GWHAAZE00000007	CDS	57760325	57760587	-
GWHAAZE00000007	CDS	57759698	57759833	-

Transcript Sequence
>GWHTAAZE025263 ATGAAATACCCGTGTGTTAATTTCCTCAATAAAACTAACATTCTTTTCATAAGGAGCTTAGCAATATTACTGCTGAGTTTTCTTGCTATTAAGCTAAACCTCTGCTTTTCTACTATCCCGGCTTCTTTAAAGACACTTTCTCTTCAAGGGCATCTAAGTTTTAGTGAAAATGAATTCGCGGCCAAAGACTTTGGGAACCAGTACCATTTCCTCCCTATAGCAGTTCTACATCCAAAGTCTGTTTCTGATATTGCCCTCACTATAAGGCATATATGGCAAATGGGTCCCGGCTCGGAGCTCACCGTTGCAGCTCGAGGGCATGGGCACTCCCTCCAAGGCCAAGCACAAGCTCACCGAGGGGTAGTGATAAACATGGAGTCACTCAATATGCCAAAAATATACTTTCACACCGGAAACTTTCCTTTTGTGGACGTCTCTGGGGGAGAATTGTGGATAAATATTCTGCACGAAAGCCTCAAGTATGGGTTAGCGCCGAAATCTTGGACAGATTACTTGCATCTGACTGTTGGTGGTACTTTGTCCAATGCGGGGATCAGTGGCCAGGCATTTCGGCATGGCCCACAAATCAGTAATGTTCACCAGCTGGAAATTGTTACAGGAACTGGGGAGGTGGTGAACTGTTCAGATCATCAAAACGCGGACCTTTTTCATGGCGTTCTCGGAGGACTTGGTCAGTTTGGCATTATAACCCGAGCAAGAATTTCCCTCGAACCAGCACCAAAGAAGGTGAAATGGATCAGAGTGCTGTACTCAGATTTCTCCACATTTTCCATAGACCAGGAGAAACTAATATCTGCAGAGAATACATTTGATTATATTGAAGGACTAGTAATAATGAACAGAACTGGTATACTAAACAACTGGAGGTTATCTTTCAACCCACAAGACCCTGTTCAAGCTAGTCAATTCAAGTCTGATAGTAGAACACTTTTTTGCCTCGAATTGGCCAAAAACTTCAATCCAGAAAGCATCGAGGCAATTAACCAGGAAATCGAGAGCTTATTATCTCAATTAAGCTATATTCAATCAACACTTTTCATGTCCGAAGTTTCATACGTTGAATTCTTGGACAGAGTTCACTCGTCCGAGCTCAAACTACGATCAAAAGGCTTGTGGGAAATTCCACACCCTTGGCTTAATCTTCTCGTCCCAAAGAGCAAAATCCACGAGTTTGCTCAAGAAGTTTTTGGCAACATTTTAACGGATACAAGCAATGGCCCCGTTCTTGTCTATCCAGTTAACAAGTCAAAGTGGGATAATAGAAGTTCAGTTGTTCTTCCAGAGGGTGATATAATGTATCTAGTAGCCTTCCTTACTCAAGCAGTTCCCTCATCCGCAGGAACAAACAGCTTAGAATACATACTAAATCAGAACCAAAAATCCTAG

Network for GWHGAAZE025229

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	72	215	7.00E-18
PF09265.11	Cytokin-bind	247	467	9.90E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009690	biological_process	cytokinin metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0003824	molecular_function	catalytic activity
GO:0071949	molecular_function	FAD binding
GO:0019139	molecular_function	cytokinin dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.133
	SRR3591706	second leaf	0.135
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.135
	SRR3591709	Stem	0.382
	SRR3591710	White floral bud	0.559
	SRR3591711	White flower	1.326
	SRR3591712	Green floral bud	1.921
	SRR3591713	Yellow flower	0.332
SRP173429	SRR8316895	Juvenile bud stage	1.021
	SRR8316896	Juvenile bud stage	1.684
	SRR8316897	Juvenile bud stage	0.914
	SRR8316894	Third green stage	1.024
	SRR8316900	Third green stage	3.637
	SRR8316901	Third green stage	3.184
	SRR8316898	Complete white stage	0.112
	SRR8316899	Complete white stage	0.510
	SRR8316903	Complete white stage	0.197
	SRR8316902	Silver flowering stage	0.034
	SRR8316904	Silver flowering stage	0.013
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.106
	SRR8316907	Gold flowering stage	0.274
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.188
	SRR6706287	Light intensity 50%	1.226
	SRR6706288	Light intensity 20%	0.885
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.776
	CNS0095593	Slightly white alabastrum(diploid) 2	2.603
	CNS0095594	Slightly white alabastrum(diploid) 3	1.031
	CNS0095595	Whole white alabastrum(diploid) 2	2.360
	CNS0095596	Whole white alabastrum(diploid) 3	1.984
	CNS0095597	Whole white alabastrum(diploid) 4	1.502
	CNS0095598	Silvery flower (diploied) 1	1.058
	CNS0095599	Silvery flower (diploied) 2	2.424
	CNS0095600	Silvery flower (diploied) 3	1.053
	CNS0095601	Golden flower (diploid) 1	0.752
	CNS0095602	Golden flower (diploid) 2	1.315
	CNS0095603	Golden flower (diploid) 3	1.290
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.558
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.177
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.728
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.611
	CNS0095610	Silvery flower (tetraploid) 1	0.083
	CNS0095611	Silvery flower (tetraploid) 2	0.081
	CNS0095612	Silvery flower (tetraploid) 3	0.126
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.508
	CRR073298	Stem 2	0.682
	CRR073299	Stem 3	0.264
	CRR073300	Leaf 1	1.132
	CRR073301	Leaf 2	1.508
	CRR073302	Leaf 3	1.366
	CRR073303	Juvenile bud 1	0.618
	CRR073304	Juvenile bud 2	0.258
	CRR073305	Juvenile bud 3	1.269
	CRR073306	Third green 1	0.107
	CRR073307	Third green 2	0.085
	CRR073308	Third green 3	0.084
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.394
	CRR073316	Gold flowering 2	0.002
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.002
	CRR073319	Tawny withering 2	0.209
	CRR073320	Tawny withering 3	0.000