Detail information of GWHGAAZE025228


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271029.10PREDICTED: probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Vitis vinifera]
COGYP_003834475.16E-14NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
Swissprottr|Q8S0G4|GPDH1_ORYSJ0Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic
trEMBLtr|D7TDP0|D7TDP0_VITVI0Glycerol-3-phosphate dehydrogenase [NAD(+)] {ECO:0000256|RuleBase:RU361243}
TAIR10AT2G41540.306-phosphogluconate dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5774354557747110-
GWHAAZE00000007mRNA5774354557747110-
GWHAAZE00000007exon5774354557743568-
GWHAAZE00000007exon5774369457743941-
GWHAAZE00000007exon5774529557745516-
GWHAAZE00000007exon5774645957747110-
GWHAAZE00000007CDS5774645957747110-
GWHAAZE00000007CDS5774529557745516-
GWHAAZE00000007CDS5774369457743941-
GWHAAZE00000007CDS5774354557743568-
Transcript Sequence

Network for GWHGAAZE025228

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01210.24NAD_Gly3P_dh_N1452475.00E-11
PF07479.15NAD_Gly3P_dh_C2733623.10E-18
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00006GPD1 Biosynthesis of secondary metabolites map01110
Glycerophospholipid metabolismmap00564
MAPK signaling pathway - yeastmap04011

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0055114biological_processoxidation-reduction process
GO:0006072biological_processglycerol-3-phosphate metabolic process
GO:0046168biological_processglycerol-3-phosphate catabolic process
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287molecular_functionNAD binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.339
SRR3591706second leaf10.054
SRR3591707mature leaf10.730
SRR3591708Shoot apex11.155
SRR3591709Stem17.986
SRR3591710White floral bud23.030
SRR3591711White flower30.541
SRR3591712Green floral bud20.655
SRR3591713Yellow flower37.673
SRP173429 SRR8316895Juvenile bud stage 17.682
SRR8316896Juvenile bud stage 21.562
SRR8316897Juvenile bud stage 15.682
SRR8316894Third green stage 8.276
SRR8316900Third green stage 26.683
SRR8316901Third green stage 25.335
SRR8316898Complete white stage 9.552
SRR8316899Complete white stage 33.719
SRR8316903Complete white stage 17.211
SRR8316902Silver flowering stage15.449
SRR8316904Silver flowering stage19.199
SRR8316905Silver flowering stage9.546
SRR8316906Gold flowering stage 43.315
SRR8316907Gold flowering stage 35.987
SRR8316908Gold flowering stage 44.851
SRP132670SRR6706286Control26.487
SRR6706287Light intensity 50%26.761
SRR6706288Light intensity 20%29.960
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.992
CNS0095593Slightly white alabastrum(diploid) 218.860
CNS0095594Slightly white alabastrum(diploid) 315.384
CNS0095595Whole white alabastrum(diploid) 218.950
CNS0095596Whole white alabastrum(diploid) 311.610
CNS0095597Whole white alabastrum(diploid) 413.447
CNS0095598Silvery flower (diploied) 114.399
CNS0095599Silvery flower (diploied) 215.241
CNS0095600Silvery flower (diploied) 326.189
CNS0095601Golden flower (diploid) 115.882
CNS0095602Golden flower (diploid) 223.909
CNS0095603Golden flower (diploid) 323.589
CNS0095604Slightly white alabastrum(tetraploid) 114.611
CNS0095605Slightly white alabastrum(tetraploid) 211.678
CNS0095606Slightly white alabastrum(tetraploid) 322.107
CNS0095607Whole white alabastrum(tetraploid) 111.284
CNS0095608Whole white alabastrum(tetraploid) 212.913
CNS0095609Whole white alabastrum(tetraploid) 319.687
CNS0095610Silvery flower (tetraploid) 131.402
CNS0095611Silvery flower (tetraploid) 227.112
CNS0095612Silvery flower (tetraploid) 322.585
CNS0095613Golden flower (tetraploid) 121.630
CNS0095614Golden flower (tetraploid) 228.565
CNS0095615Golden flower (tetraploid) 324.107
CRA001975CRR073297Stem 117.396
CRR073298Stem 215.886
CRR073299Stem 314.822
CRR073300Leaf 124.792
CRR073301Leaf 221.211
CRR073302Leaf 321.568
CRR073303Juvenile bud 123.704
CRR073304Juvenile bud 221.299
CRR073305Juvenile bud 324.294
CRR073306Third green 114.258
CRR073307Third green 213.972
CRR073308Third green 313.006
CRR073309Second white 114.855
CRR073310Second white 224.723
CRR073311Second white 318.204
CRR073312Silver flowering 120.455
CRR073313Silver flowering 215.926
CRR073314Silver flowering 326.382
CRR073315Gold flowering 113.906
CRR073316Gold flowering 219.920
CRR073317Gold flowering 38.718
CRR073318Tawny withering 117.513
CRR073319Tawny withering 216.249
CRR073320Tawny withering 324.277