Gene detail

Detail information of GWHGAAZE025130

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09313.1	2.6089E-100	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q84TK1\|BH010_ARATH	2E-69	Transcription factor bHLH10
trEMBL	tr\|A0A068UNW9\|A0A068UNW9_COFCA	1E-100	Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313\|EMBL:CDP09313.1}
TAIR10	AT2G31220.1	1E-51	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000007	gene	55817407	55818918	-
GWHAAZE00000007	mRNA	55817407	55818918	-
GWHAAZE00000007	exon	55817407	55817856	-
GWHAAZE00000007	exon	55818231	55818427	-
GWHAAZE00000007	exon	55818507	55818918	-
GWHAAZE00000007	CDS	55818507	55818918	-
GWHAAZE00000007	CDS	55818231	55818427	-
GWHAAZE00000007	CDS	55817407	55817856	-

Transcript Sequence
>GWHTAAZE025164 ATGTACGAAGATAGTAATCCTACATATTTTGATCCAAACTCTGTTCAAGTGCTTCCAAATGATGGGTTCTCACAAACAAATCACCACCAAATTTGCAACCCTGATTTCTCTATGGAAGAACACCTCACTTACCAACAAAATCAATCCCAAGAAGATGCCCCCATGGCATTAGAGCTTCAAAATCAGCTCAACCTAGAGATGGACCAAATCAATGACACCACCACCCATTTGATGCAAGAAGTGGATCATGAACAACCCAATTGGGGTTATTACCAGCACGAACAAATTAATGGAGGGTCTCATCAAAACCAGTACTCCCAAACACCAGATATCCTCAATTTCTTCAATATACCAAGATCCACTCTGTTCCCAAATTCATCCATCACCTTTTCGAACCCGACCCACAATTCAGGTCTGCCCCAAGGGAGCCAATTTGATGACGGGGTGTTCCAAGATGGAGATGAGAGCCAATATGATGATGCGGTATTAGAGTTTAGGAGAGGGAGGGATGGGAAAGATACAAAACACTTTGCTACTGAGAAGCAAAGGAGGGTTGACTTCAATGATAAGTTTACGGCTTTGAGGGAATTGGTTCCCAATCCAACCAAGAATGATAGAGCGTCAATAGTGGGAGATGCAATTCAATACATAGAAGAGCTCAAAAGAACAGTGACAGAGCTCAAGATTCTTGTAGAGAAAAAAAGATGCAGCAGAGAGAGAATGAAGAGGCGCAAGATGGAAGCTGGCTCTGAAATTGATCAGATAGATAGCATCGACATGAAGCCTGATGGTGATCCAGATCAGCCCTTCAATGGCACTTCCTCATTGAGAAGCTCATGGCTAAAAAGAAAATCAAAGAACATTGAGGTCGACGTTCGTATAATCGACGATCAAGCGACCATTCAATTGGTGCAGCAGAAGAGGATTAATTGTTTGTTGTTTGTGTCAAAGGCTCTTGATGAACTTCAGTTGGATCTTCACCATGTCGCTGGTGGACTTATTGGTGATTTCTACAGTTTCTTGTTCAACACCAAGGTGGTTTCTAACCTTTGCTCTTAA

Network for GWHGAAZE025130

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	174	220	4.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.209
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.071
	SRR3591712	Green floral bud	0.176
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.219
	SRR8316896	Juvenile bud stage	0.136
	SRR8316897	Juvenile bud stage	0.751
	SRR8316894	Third green stage	0.063
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.028
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.073
	SRR6706287	Light intensity 50%	0.111
	SRR6706288	Light intensity 20%	0.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.058
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.386
	CNS0095595	Whole white alabastrum(diploid) 2	0.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.074
	CNS0095597	Whole white alabastrum(diploid) 4	0.136
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.029
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.471
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.295
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.572
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	0.376
	CRR073298	Stem 2	0.210
	CRR073299	Stem 3	0.352
	CRR073300	Leaf 1	0.060
	CRR073301	Leaf 2	0.132
	CRR073302	Leaf 3	0.174
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.003
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000