Detail information of GWHGAAZE025126


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP09319.18.473E-107unnamed protein product [Coffea canephora]
Swissprottr|Q9SRQ8|ATL51_ARATH5E-71RING-H2 finger protein ATL51
trEMBLtr|A0A068UM57|A0A068UM57_COFCA3E-107Coffea canephora DH200=94 genomic scaffold, scaffold_38 {ECO:0000313|EMBL:CDP09319.1}
TAIR10AT5G17600.13E-54RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000007gene5574119555742151+
GWHAAZE00000007mRNA5574119555742151+
GWHAAZE00000007exon5574119555742151+
GWHAAZE00000007CDS5574119555742151+
Transcript Sequence

Network for GWHGAAZE025126

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21371802.80E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.868
SRR3591706second leaf6.485
SRR3591707mature leaf2.285
SRR3591708Shoot apex4.368
SRR3591709Stem60.718
SRR3591710White floral bud2.535
SRR3591711White flower2.303
SRR3591712Green floral bud3.896
SRR3591713Yellow flower0.250
SRP173429 SRR8316895Juvenile bud stage 4.406
SRR8316896Juvenile bud stage 3.159
SRR8316897Juvenile bud stage 0.646
SRR8316894Third green stage 1.329
SRR8316900Third green stage 2.032
SRR8316901Third green stage 2.630
SRR8316898Complete white stage 0.045
SRR8316899Complete white stage 2.120
SRR8316903Complete white stage 0.195
SRR8316902Silver flowering stage0.077
SRR8316904Silver flowering stage0.036
SRR8316905Silver flowering stage0.036
SRR8316906Gold flowering stage 0.131
SRR8316907Gold flowering stage 0.073
SRR8316908Gold flowering stage 0.130
SRP132670SRR6706286Control2.215
SRR6706287Light intensity 50%2.605
SRR6706288Light intensity 20%2.189
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.965
CNS0095593Slightly white alabastrum(diploid) 23.508
CNS0095594Slightly white alabastrum(diploid) 32.454
CNS0095595Whole white alabastrum(diploid) 21.231
CNS0095596Whole white alabastrum(diploid) 32.057
CNS0095597Whole white alabastrum(diploid) 41.291
CNS0095598Silvery flower (diploied) 10.268
CNS0095599Silvery flower (diploied) 20.127
CNS0095600Silvery flower (diploied) 30.207
CNS0095601Golden flower (diploid) 10.146
CNS0095602Golden flower (diploid) 20.074
CNS0095603Golden flower (diploid) 30.443
CNS0095604Slightly white alabastrum(tetraploid) 11.672
CNS0095605Slightly white alabastrum(tetraploid) 21.439
CNS0095606Slightly white alabastrum(tetraploid) 34.744
CNS0095607Whole white alabastrum(tetraploid) 10.878
CNS0095608Whole white alabastrum(tetraploid) 20.636
CNS0095609Whole white alabastrum(tetraploid) 33.463
CNS0095610Silvery flower (tetraploid) 10.057
CNS0095611Silvery flower (tetraploid) 20.086
CNS0095612Silvery flower (tetraploid) 30.595
CNS0095613Golden flower (tetraploid) 10.117
CNS0095614Golden flower (tetraploid) 20.139
CNS0095615Golden flower (tetraploid) 30.545
CRA001975CRR073297Stem 17.013
CRR073298Stem 23.338
CRR073299Stem 34.139
CRR073300Leaf 11.976
CRR073301Leaf 22.142
CRR073302Leaf 31.907
CRR073303Juvenile bud 12.192
CRR073304Juvenile bud 20.702
CRR073305Juvenile bud 31.298
CRR073306Third green 10.196
CRR073307Third green 20.042
CRR073308Third green 30.059
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.273
CRR073315Gold flowering 12.187
CRR073316Gold flowering 21.429
CRR073317Gold flowering 31.663
CRR073318Tawny withering 124.871
CRR073319Tawny withering 217.410
CRR073320Tawny withering 337.500